Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24760

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24755 and RR42_RS24760 are separated by 217 nucleotides RR42_RS24755: RR42_RS24755 - ATP synthase subunit beta, at 890,045 to 893,467 _RS24755 RR42_RS24760: RR42_RS24760 - hypothetical protein, at 893,685 to 893,993 _RS24760 Position (kb) 893 894Strain fitness (log2 ratio) -2 -1 0 1 2at 892.922 kb on + strand, within RR42_RS24755at 892.923 kb on - strand, within RR42_RS24755at 892.972 kb on + strand, within RR42_RS24755at 892.973 kb on - strand, within RR42_RS24755at 893.078 kb on + strand, within RR42_RS24755at 893.079 kb on - strand, within RR42_RS24755at 893.256 kb on + strandat 893.257 kb on - strandat 893.323 kb on - strandat 893.634 kb on - strandat 893.671 kb on + strandat 893.757 kb on - strand, within RR42_RS24760at 894.068 kb on - strandat 894.070 kb on + strandat 894.409 kb on + strandat 894.410 kb on - strandat 894.546 kb on + strandat 894.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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892,922 + RR42_RS24755 0.84 +0.1
892,923 - RR42_RS24755 0.84 -0.7
892,972 + RR42_RS24755 0.86 -0.8
892,973 - RR42_RS24755 0.86 +1.2
893,078 + RR42_RS24755 0.89 +1.9
893,079 - RR42_RS24755 0.89 -1.9
893,256 + -1.8
893,257 - -2.2
893,323 - +0.7
893,634 - +0.5
893,671 + -0.5
893,757 - RR42_RS24760 0.23 -0.2
894,068 - +0.4
894,070 + +0.3
894,409 + +0.7
894,410 - -0.6
894,546 + +0.7
894,706 + +1.0

Or see this region's nucleotide sequence