Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides RR42_RS24675 and RR42_RS24680 are separated by 42 nucleotides RR42_RS24680 and RR42_RS24685 are separated by 39 nucleotides RR42_RS24685 and RR42_RS24690 are separated by 41 nucleotides
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
RR42_RS24680: RR42_RS24680 - hypothetical protein, at 875,153 to 875,704
_RS24680
RR42_RS24685: RR42_RS24685 - hypothetical protein, at 875,744 to 876,016
_RS24685
RR42_RS24690: RR42_RS24690 - hypothetical protein, at 876,058 to 876,303
_RS24690
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.990 kb on + strand at 872.990 kb on + strand at 872.991 kb on - strand at 873.061 kb on + strand at 873.223 kb on + strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.323 kb on + strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.475 kb on + strand, within RR42_RS24670 at 873.555 kb on + strand, within RR42_RS24670 at 873.556 kb on - strand, within RR42_RS24670 at 873.605 kb on + strand at 873.606 kb on - strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.851 kb on - strand at 873.946 kb on + strand at 874.256 kb on + strand, within RR42_RS24675 at 874.548 kb on + strand, within RR42_RS24675 at 874.549 kb on - strand, within RR42_RS24675 at 874.549 kb on - strand at 874.647 kb on - strand, within RR42_RS24675 at 874.725 kb on + strand, within RR42_RS24675 at 874.725 kb on + strand, within RR42_RS24675 at 874.726 kb on - strand, within RR42_RS24675 at 875.019 kb on - strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.118 kb on - strand at 875.128 kb on + strand at 875.218 kb on + strand, within RR42_RS24680 at 875.219 kb on - strand, within RR42_RS24680 at 875.636 kb on - strand, within RR42_RS24680 at 875.646 kb on + strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.658 kb on + strand at 875.698 kb on + strand at 875.699 kb on - strand at 875.837 kb on - strand, within RR42_RS24685 at 875.867 kb on + strand, within RR42_RS24685 at 875.956 kb on - strand, within RR42_RS24685
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 872,990 + -2.6 872,990 + +2.0 872,991 - -1.2 873,061 + -1.2 873,223 + RR42_RS24670 0.29 -1.5 873,224 - RR42_RS24670 0.29 -0.7 873,224 - RR42_RS24670 0.29 +0.7 873,224 - RR42_RS24670 0.29 -1.1 873,224 - RR42_RS24670 0.29 +2.3 873,290 + RR42_RS24670 0.41 -2.4 873,290 + RR42_RS24670 0.41 +0.4 873,291 - RR42_RS24670 0.41 -0.7 873,291 - RR42_RS24670 0.41 -0.3 873,291 - RR42_RS24670 0.41 -0.6 873,323 + RR42_RS24670 0.47 -0.6 873,324 - RR42_RS24670 0.47 -0.2 873,324 - RR42_RS24670 0.47 -1.0 873,324 - RR42_RS24670 0.47 -1.0 873,475 + RR42_RS24670 0.74 +0.1 873,555 + RR42_RS24670 0.89 +2.0 873,556 - RR42_RS24670 0.89 -0.4 873,605 + -0.4 873,606 - -2.3 873,692 + -0.4 873,692 + -0.2 873,692 + -0.9 873,692 + -0.8 873,701 + +1.0 873,702 - +1.5 873,702 - +0.9 873,702 - +1.0 873,702 - +0.5 873,702 - -0.6 873,702 - +0.4 873,851 - -1.3 873,946 + -0.0 874,256 + RR42_RS24675 0.27 -0.8 874,548 + RR42_RS24675 0.52 -0.2 874,549 - RR42_RS24675 0.52 +0.3 874,549 - +2.0 874,647 - RR42_RS24675 0.60 -0.1 874,725 + RR42_RS24675 0.67 +1.6 874,725 + RR42_RS24675 0.67 +0.6 874,726 - RR42_RS24675 0.67 -0.8 875,019 - +0.4 875,117 + -0.3 875,117 + -0.2 875,117 + -0.7 875,118 - +0.4 875,128 + -0.4 875,218 + RR42_RS24680 0.12 -0.1 875,219 - RR42_RS24680 0.12 +0.0 875,636 - RR42_RS24680 0.88 -0.4 875,646 + RR42_RS24680 0.89 +1.7 875,647 - RR42_RS24680 0.89 -0.3 875,647 - RR42_RS24680 0.89 +0.0 875,658 + +0.7 875,698 + +0.1 875,699 - -0.4 875,837 - RR42_RS24685 0.34 -1.0 875,867 + RR42_RS24685 0.45 -0.2 875,956 - RR42_RS24685 0.78 -0.6
Or see this region's nucleotide sequence