Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24645 and RR42_RS24650 are separated by 245 nucleotides RR42_RS24650 and RR42_RS24655 are separated by 64 nucleotides RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides
RR42_RS24645: RR42_RS24645 - hypothetical protein, at 866,181 to 866,861
_RS24645
RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796
_RS24650
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 866.968 kb on - strand at 866.968 kb on - strand at 866.986 kb on + strand at 867.037 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.244 kb on + strand, within RR42_RS24650 at 867.247 kb on + strand, within RR42_RS24650 at 867.284 kb on + strand, within RR42_RS24650 at 867.285 kb on - strand, within RR42_RS24650 at 867.331 kb on - strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.455 kb on - strand, within RR42_RS24650 at 867.473 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.620 kb on + strand, within RR42_RS24650 at 867.625 kb on + strand, within RR42_RS24650 at 867.762 kb on - strand at 867.762 kb on - strand at 867.811 kb on + strand at 867.812 kb on - strand at 867.824 kb on - strand at 867.979 kb on - strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.039 kb on - strand, within RR42_RS24655 at 868.044 kb on + strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.131 kb on - strand, within RR42_RS24655 at 868.267 kb on - strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.286 kb on - strand, within RR42_RS24655 at 868.427 kb on + strand, within RR42_RS24655 at 868.428 kb on - strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.524 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.569 kb on + strand at 868.594 kb on - strand at 868.604 kb on + strand at 869.038 kb on + strand at 869.038 kb on + strand at 869.039 kb on - strand at 869.300 kb on + strand, within RR42_RS24660 at 869.300 kb on + strand, within RR42_RS24660 at 869.301 kb on - strand, within RR42_RS24660 at 869.364 kb on - strand, within RR42_RS24660 at 869.436 kb on + strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 866,968 - -1.4 866,968 - +0.0 866,986 + -1.2 867,037 + -0.4 867,170 + -1.6 867,170 + -0.7 867,170 + +0.1 867,244 + RR42_RS24650 0.20 +0.8 867,247 + RR42_RS24650 0.20 -0.6 867,284 + RR42_RS24650 0.26 +0.6 867,285 - RR42_RS24650 0.26 +2.4 867,331 - RR42_RS24650 0.32 -1.2 867,337 + RR42_RS24650 0.33 -1.2 867,337 + RR42_RS24650 0.33 -0.8 867,404 + RR42_RS24650 0.43 +2.0 867,404 + RR42_RS24650 0.43 -0.5 867,405 - RR42_RS24650 0.43 +0.2 867,405 - RR42_RS24650 0.43 -0.6 867,405 - RR42_RS24650 0.43 -0.3 867,405 - RR42_RS24650 0.43 -1.6 867,405 - RR42_RS24650 0.43 -0.6 867,405 - RR42_RS24650 0.43 -0.7 867,455 - RR42_RS24650 0.50 -0.3 867,473 + RR42_RS24650 0.53 +0.4 867,479 + RR42_RS24650 0.54 +0.2 867,479 + RR42_RS24650 0.54 -0.9 867,519 - RR42_RS24650 0.60 +1.0 867,519 - RR42_RS24650 0.60 -0.6 867,519 - RR42_RS24650 0.60 -0.2 867,620 + RR42_RS24650 0.74 -1.0 867,625 + RR42_RS24650 0.75 +0.8 867,762 - -2.1 867,762 - -1.7 867,811 + -0.1 867,812 - +1.4 867,824 - -0.6 867,979 - RR42_RS24655 0.17 +0.3 868,038 + RR42_RS24655 0.25 +1.0 868,038 + RR42_RS24655 0.25 -0.6 868,039 - RR42_RS24655 0.25 +1.6 868,044 + RR42_RS24655 0.26 -0.5 868,045 - RR42_RS24655 0.26 -0.6 868,045 - RR42_RS24655 0.26 +0.4 868,131 - RR42_RS24655 0.38 -0.6 868,267 - RR42_RS24655 0.58 -2.0 868,285 + RR42_RS24655 0.60 -1.8 868,285 + RR42_RS24655 0.60 +2.0 868,285 + RR42_RS24655 0.60 -0.5 868,286 - RR42_RS24655 0.61 -0.2 868,427 + RR42_RS24655 0.81 -1.8 868,428 - RR42_RS24655 0.81 +1.1 868,429 + RR42_RS24655 0.81 +0.4 868,429 + RR42_RS24655 0.81 +1.0 868,429 + RR42_RS24655 0.81 +0.3 868,429 + RR42_RS24655 0.81 +0.1 868,430 - RR42_RS24655 0.81 -0.3 868,430 - RR42_RS24655 0.81 +2.0 868,430 - RR42_RS24655 0.81 -1.0 868,524 + -1.4 868,525 + +3.0 868,525 + -0.3 868,525 + -1.4 868,525 + -0.6 868,526 - +1.0 868,526 - +0.7 868,526 - +0.7 868,526 - -0.3 868,548 - +1.0 868,548 - +0.8 868,548 - +0.3 868,569 + +0.6 868,594 - -0.1 868,604 + -0.6 869,038 + -1.6 869,038 + +0.4 869,039 - -0.8 869,300 + RR42_RS24660 0.17 +0.3 869,300 + RR42_RS24660 0.17 -0.4 869,301 - RR42_RS24660 0.17 +0.3 869,364 - RR42_RS24660 0.19 -0.1 869,436 + RR42_RS24660 0.21 +1.0 869,437 - RR42_RS24660 0.21 +0.3 869,437 - RR42_RS24660 0.21 +0.5 869,460 + RR42_RS24660 0.22 -0.2 869,460 + RR42_RS24660 0.22 +0.1
Or see this region's nucleotide sequence