Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides RR42_RS23920 and RR42_RS23925 overlap by 4 nucleotides RR42_RS23925 and RR42_RS23930 are separated by 272 nucleotides RR42_RS23930 and RR42_RS23935 are separated by 140 nucleotides
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
RR42_RS23925: RR42_RS23925 - conjugal transfer protein, at 693,493 to 694,548
_RS23925
RR42_RS23930: RR42_RS23930 - hypothetical protein, at 694,821 to 695,156
_RS23930
RR42_RS23935: RR42_RS23935 - hypothetical protein, at 695,297 to 696,442
_RS23935
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.668 kb on - strand, within RR42_RS23915 at 692.901 kb on + strand at 692.901 kb on + strand at 692.905 kb on - strand at 692.909 kb on - strand at 692.964 kb on - strand, within RR42_RS23920 at 693.138 kb on - strand, within RR42_RS23920 at 693.354 kb on - strand, within RR42_RS23920 at 693.392 kb on + strand, within RR42_RS23920 at 693.438 kb on + strand at 693.438 kb on + strand at 693.438 kb on + strand at 693.639 kb on + strand, within RR42_RS23925 at 693.818 kb on + strand, within RR42_RS23925 at 693.819 kb on - strand, within RR42_RS23925 at 693.931 kb on + strand, within RR42_RS23925 at 693.932 kb on - strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.947 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.205 kb on - strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.372 kb on + strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.390 kb on + strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.504 kb on + strand at 694.555 kb on + strand at 694.828 kb on + strand at 694.828 kb on + strand at 694.829 kb on - strand at 694.829 kb on - strand at 695.289 kb on + strand at 695.450 kb on + strand, within RR42_RS23935 at 695.451 kb on - strand, within RR42_RS23935 at 695.452 kb on + strand, within RR42_RS23935 at 695.453 kb on - strand, within RR42_RS23935 at 695.480 kb on + strand, within RR42_RS23935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 692,668 - RR42_RS23915 0.57 +1.3 692,901 + +0.3 692,901 + -0.7 692,905 - +0.0 692,909 - +0.5 692,964 - RR42_RS23920 0.15 -0.3 693,138 - RR42_RS23920 0.43 +0.1 693,354 - RR42_RS23920 0.77 -0.1 693,392 + RR42_RS23920 0.83 +0.7 693,438 + -0.3 693,438 + +0.6 693,438 + -0.7 693,639 + RR42_RS23925 0.14 -0.3 693,818 + RR42_RS23925 0.31 -0.7 693,819 - RR42_RS23925 0.31 +0.8 693,931 + RR42_RS23925 0.41 -0.1 693,932 - RR42_RS23925 0.42 +0.8 693,946 + RR42_RS23925 0.43 +0.1 693,946 + RR42_RS23925 0.43 +1.8 693,947 - RR42_RS23925 0.43 +2.0 694,025 - RR42_RS23925 0.50 -2.0 694,025 - RR42_RS23925 0.50 +0.1 694,204 + RR42_RS23925 0.67 +0.5 694,204 + RR42_RS23925 0.67 -0.8 694,205 - RR42_RS23925 0.67 +0.2 694,339 + RR42_RS23925 0.80 +0.0 694,339 + RR42_RS23925 0.80 +0.3 694,340 - RR42_RS23925 0.80 -0.6 694,340 - RR42_RS23925 0.80 +1.9 694,372 + RR42_RS23925 0.83 +1.5 694,373 - RR42_RS23925 0.83 -0.8 694,373 - RR42_RS23925 0.83 +0.1 694,390 + RR42_RS23925 0.85 +0.7 694,391 - RR42_RS23925 0.85 +2.3 694,391 - RR42_RS23925 0.85 -0.8 694,504 + -0.6 694,555 + +1.0 694,828 + -0.4 694,828 + -1.5 694,829 - +0.0 694,829 - +0.3 695,289 + +0.8 695,450 + RR42_RS23935 0.13 -2.0 695,451 - RR42_RS23935 0.13 +0.8 695,452 + RR42_RS23935 0.14 +0.9 695,453 - RR42_RS23935 0.14 -0.1 695,480 + RR42_RS23935 0.16 -1.2
Or see this region's nucleotide sequence