Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23745 and RR42_RS23750 are separated by 66 nucleotides RR42_RS23750 and RR42_RS23755 are separated by 170 nucleotides
RR42_RS23745: RR42_RS23745 - phenylacetic acid degradation protein, at 651,275 to 652,363
_RS23745
RR42_RS23750: RR42_RS23750 - aldehyde dehydrogenase, at 652,430 to 654,112
_RS23750
RR42_RS23755: RR42_RS23755 - phenylacetate--CoA ligase, at 654,283 to 655,608
_RS23755
Position (kb) 652
653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 651.636 kb on - strand, within RR42_RS23745 at 652.136 kb on + strand, within RR42_RS23745 at 652.137 kb on - strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.349 kb on + strand at 652.502 kb on + strand at 652.899 kb on + strand, within RR42_RS23750 at 652.899 kb on + strand, within RR42_RS23750 at 652.913 kb on + strand, within RR42_RS23750 at 652.914 kb on - strand, within RR42_RS23750 at 652.952 kb on + strand, within RR42_RS23750 at 653.070 kb on - strand, within RR42_RS23750 at 653.348 kb on + strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.477 kb on + strand, within RR42_RS23750 at 653.478 kb on - strand, within RR42_RS23750 at 653.478 kb on - strand, within RR42_RS23750 at 653.880 kb on - strand, within RR42_RS23750 at 653.881 kb on + strand, within RR42_RS23750 at 653.881 kb on + strand, within RR42_RS23750 at 653.881 kb on + strand, within RR42_RS23750 at 654.110 kb on + strand at 654.110 kb on + strand at 654.111 kb on - strand at 654.142 kb on + strand at 654.143 kb on - strand at 654.143 kb on - strand at 654.330 kb on - strand at 654.394 kb on + strand at 654.394 kb on + strand at 654.394 kb on + strand at 654.394 kb on + strand at 654.394 kb on + strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.395 kb on - strand at 654.490 kb on - strand, within RR42_RS23755 at 654.490 kb on - strand, within RR42_RS23755 at 654.517 kb on + strand, within RR42_RS23755 at 654.518 kb on - strand, within RR42_RS23755 at 654.803 kb on + strand, within RR42_RS23755 at 654.804 kb on - strand, within RR42_RS23755 at 654.804 kb on - strand, within RR42_RS23755 at 654.804 kb on - strand, within RR42_RS23755 at 654.853 kb on + strand, within RR42_RS23755 at 654.853 kb on + strand, within RR42_RS23755 at 654.853 kb on + strand, within RR42_RS23755 at 654.853 kb on + strand, within RR42_RS23755 at 654.854 kb on - strand, within RR42_RS23755 at 654.854 kb on - strand, within RR42_RS23755 at 654.861 kb on + strand, within RR42_RS23755 at 654.862 kb on - strand, within RR42_RS23755 at 655.003 kb on + strand, within RR42_RS23755 at 655.004 kb on - strand, within RR42_RS23755 at 655.004 kb on - strand, within RR42_RS23755 at 655.004 kb on - strand, within RR42_RS23755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 651,636 - RR42_RS23745 0.33 +1.7 652,136 + RR42_RS23745 0.79 -1.2 652,137 - RR42_RS23745 0.79 -1.8 652,190 + RR42_RS23745 0.84 -0.6 652,190 + RR42_RS23745 0.84 -2.1 652,191 - RR42_RS23745 0.84 +0.0 652,191 - RR42_RS23745 0.84 -0.1 652,349 + +0.2 652,502 + -0.4 652,899 + RR42_RS23750 0.28 +0.1 652,899 + RR42_RS23750 0.28 -1.1 652,913 + RR42_RS23750 0.29 -1.3 652,914 - RR42_RS23750 0.29 -0.5 652,952 + RR42_RS23750 0.31 -0.6 653,070 - RR42_RS23750 0.38 +0.9 653,348 + RR42_RS23750 0.55 -0.8 653,349 - RR42_RS23750 0.55 -3.5 653,349 - RR42_RS23750 0.55 -1.6 653,349 - RR42_RS23750 0.55 +1.1 653,477 + RR42_RS23750 0.62 +0.4 653,477 + RR42_RS23750 0.62 -1.6 653,477 + RR42_RS23750 0.62 +0.1 653,477 + RR42_RS23750 0.62 +0.3 653,477 + RR42_RS23750 0.62 -0.4 653,477 + RR42_RS23750 0.62 -0.5 653,478 - RR42_RS23750 0.62 +0.2 653,478 - RR42_RS23750 0.62 -1.5 653,880 - RR42_RS23750 0.86 -0.1 653,881 + RR42_RS23750 0.86 +0.7 653,881 + RR42_RS23750 0.86 +0.0 653,881 + RR42_RS23750 0.86 +1.7 654,110 + +0.1 654,110 + -0.3 654,111 - -0.3 654,142 + +0.2 654,143 - +2.0 654,143 - -0.3 654,330 - -0.9 654,394 + +0.4 654,394 + +1.3 654,394 + +0.4 654,394 + +1.6 654,394 + -1.2 654,395 - +1.1 654,395 - -1.2 654,395 - +0.2 654,395 - -1.7 654,395 - -0.8 654,395 - -1.1 654,395 - +1.1 654,490 - RR42_RS23755 0.16 +1.0 654,490 - RR42_RS23755 0.16 +3.3 654,517 + RR42_RS23755 0.18 +0.2 654,518 - RR42_RS23755 0.18 -1.3 654,803 + RR42_RS23755 0.39 +4.6 654,804 - RR42_RS23755 0.39 -0.2 654,804 - RR42_RS23755 0.39 +0.2 654,804 - RR42_RS23755 0.39 -1.4 654,853 + RR42_RS23755 0.43 -1.9 654,853 + RR42_RS23755 0.43 -1.5 654,853 + RR42_RS23755 0.43 -0.6 654,853 + RR42_RS23755 0.43 -0.8 654,854 - RR42_RS23755 0.43 +1.0 654,854 - RR42_RS23755 0.43 -0.0 654,861 + RR42_RS23755 0.44 -0.9 654,862 - RR42_RS23755 0.44 -0.9 655,003 + RR42_RS23755 0.54 -1.3 655,004 - RR42_RS23755 0.54 -0.6 655,004 - RR42_RS23755 0.54 +0.2 655,004 - RR42_RS23755 0.54 +1.6
Or see this region's nucleotide sequence