Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23480 and RR42_RS23485 are separated by 152 nucleotides RR42_RS23485 and RR42_RS23490 are separated by 28 nucleotides
RR42_RS23480: RR42_RS23480 - 3-keto-5-aminohexanoate cleavage protein, at 594,357 to 595,190
_RS23480
RR42_RS23485: RR42_RS23485 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 595,343 to 596,128
_RS23485
RR42_RS23490: RR42_RS23490 - NADH oxidase, at 596,157 to 597,176
_RS23490
Position (kb) 595
596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 594.343 kb on - strand at 594.343 kb on - strand at 594.350 kb on + strand at 594.350 kb on + strand at 594.480 kb on - strand, within RR42_RS23480 at 594.480 kb on - strand, within RR42_RS23480 at 594.628 kb on + strand, within RR42_RS23480 at 594.750 kb on + strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.785 kb on - strand, within RR42_RS23480 at 594.954 kb on - strand, within RR42_RS23480 at 594.991 kb on - strand, within RR42_RS23480 at 595.113 kb on - strand at 595.113 kb on - strand at 595.173 kb on - strand at 595.195 kb on - strand at 595.214 kb on + strand at 595.214 kb on + strand at 595.215 kb on - strand at 595.217 kb on - strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.390 kb on - strand at 595.390 kb on - strand at 595.497 kb on + strand, within RR42_RS23485 at 595.674 kb on + strand, within RR42_RS23485 at 595.675 kb on - strand, within RR42_RS23485 at 595.675 kb on - strand, within RR42_RS23485 at 596.128 kb on + strand at 596.129 kb on - strand at 596.269 kb on + strand, within RR42_RS23490 at 596.269 kb on + strand, within RR42_RS23490 at 596.270 kb on - strand, within RR42_RS23490 at 596.270 kb on - strand, within RR42_RS23490 at 596.270 kb on - strand, within RR42_RS23490 at 596.324 kb on - strand, within RR42_RS23490 at 596.449 kb on + strand, within RR42_RS23490 at 596.449 kb on + strand, within RR42_RS23490 at 596.450 kb on - strand, within RR42_RS23490 at 596.450 kb on - strand, within RR42_RS23490 at 596.664 kb on + strand, within RR42_RS23490 at 596.665 kb on - strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.753 kb on - strand, within RR42_RS23490 at 596.984 kb on + strand, within RR42_RS23490 at 596.985 kb on - strand, within RR42_RS23490 at 596.986 kb on + strand, within RR42_RS23490 at 596.987 kb on - strand, within RR42_RS23490
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 594,343 - +0.3 594,343 - +0.3 594,350 + +0.6 594,350 + +0.5 594,480 - RR42_RS23480 0.15 -1.0 594,480 - RR42_RS23480 0.15 -1.9 594,628 + RR42_RS23480 0.32 -0.3 594,750 + RR42_RS23480 0.47 +0.3 594,751 - RR42_RS23480 0.47 +1.3 594,751 - RR42_RS23480 0.47 +0.6 594,751 - RR42_RS23480 0.47 -1.1 594,785 - RR42_RS23480 0.51 -0.1 594,954 - RR42_RS23480 0.72 -0.3 594,991 - RR42_RS23480 0.76 -0.7 595,113 - +1.3 595,113 - -0.0 595,173 - +0.2 595,195 - +2.0 595,214 + -0.8 595,214 + -0.3 595,215 - -0.2 595,217 - +1.8 595,389 + -0.3 595,389 + -0.7 595,389 + +1.4 595,389 + +0.0 595,389 + +0.0 595,389 + -0.8 595,390 - +0.8 595,390 - -0.6 595,497 + RR42_RS23485 0.20 -0.8 595,674 + RR42_RS23485 0.42 +0.4 595,675 - RR42_RS23485 0.42 +0.6 595,675 - RR42_RS23485 0.42 -0.7 596,128 + +0.2 596,129 - +0.1 596,269 + RR42_RS23490 0.11 +1.2 596,269 + RR42_RS23490 0.11 +0.0 596,270 - RR42_RS23490 0.11 +0.3 596,270 - RR42_RS23490 0.11 +0.2 596,270 - RR42_RS23490 0.11 -1.0 596,324 - RR42_RS23490 0.16 +0.2 596,449 + RR42_RS23490 0.29 -0.8 596,449 + RR42_RS23490 0.29 -0.1 596,450 - RR42_RS23490 0.29 -0.4 596,450 - RR42_RS23490 0.29 -0.7 596,664 + RR42_RS23490 0.50 +1.1 596,665 - RR42_RS23490 0.50 -1.4 596,752 + RR42_RS23490 0.58 -0.4 596,752 + RR42_RS23490 0.58 +0.1 596,752 + RR42_RS23490 0.58 -0.3 596,752 + RR42_RS23490 0.58 +0.1 596,752 + RR42_RS23490 0.58 +0.0 596,753 - RR42_RS23490 0.58 +1.6 596,984 + RR42_RS23490 0.81 -0.9 596,985 - RR42_RS23490 0.81 +0.4 596,986 + RR42_RS23490 0.81 +0.7 596,987 - RR42_RS23490 0.81 -0.2
Or see this region's nucleotide sequence