Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23025

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23020 and RR42_RS23025 are separated by 130 nucleotidesRR42_RS23025 and RR42_RS23030 are separated by 626 nucleotides RR42_RS23020: RR42_RS23020 - ABC transporter substrate-binding protein, at 498,762 to 499,742 _RS23020 RR42_RS23025: RR42_RS23025 - gamma-glutamyltransferase, at 499,873 to 501,702 _RS23025 RR42_RS23030: RR42_RS23030 - hypothetical protein, at 502,329 to 502,700 _RS23030 Position (kb) 499 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1at 498.979 kb on + strand, within RR42_RS23020at 498.979 kb on + strand, within RR42_RS23020at 498.980 kb on - strand, within RR42_RS23020at 498.997 kb on + strand, within RR42_RS23020at 499.180 kb on + strand, within RR42_RS23020at 499.180 kb on + strand, within RR42_RS23020at 499.181 kb on - strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.268 kb on - strand, within RR42_RS23020at 499.268 kb on - strand, within RR42_RS23020at 499.272 kb on + strand, within RR42_RS23020at 499.273 kb on - strand, within RR42_RS23020at 499.273 kb on - strand, within RR42_RS23020at 499.364 kb on - strand, within RR42_RS23020at 499.412 kb on + strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.511 kb on + strand, within RR42_RS23020at 499.996 kb on + strandat 499.996 kb on + strandat 500.235 kb on + strand, within RR42_RS23025at 500.235 kb on + strand, within RR42_RS23025at 500.235 kb on + strand, within RR42_RS23025at 500.235 kb on + strand, within RR42_RS23025at 500.235 kb on + strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.236 kb on - strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.237 kb on + strand, within RR42_RS23025at 500.238 kb on - strand, within RR42_RS23025at 500.238 kb on - strand, within RR42_RS23025at 500.238 kb on - strand, within RR42_RS23025at 500.238 kb on - strand, within RR42_RS23025at 500.238 kb on - strand, within RR42_RS23025at 500.727 kb on - strand, within RR42_RS23025at 500.889 kb on + strand, within RR42_RS23025at 500.889 kb on + strand, within RR42_RS23025at 500.889 kb on + strand, within RR42_RS23025at 500.889 kb on + strand, within RR42_RS23025at 500.889 kb on + strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.890 kb on - strand, within RR42_RS23025at 500.892 kb on - strand, within RR42_RS23025at 500.971 kb on - strand, within RR42_RS23025at 500.971 kb on - strand, within RR42_RS23025at 501.125 kb on + strand, within RR42_RS23025at 501.126 kb on - strand, within RR42_RS23025at 501.126 kb on - strand, within RR42_RS23025at 501.126 kb on - strand, within RR42_RS23025at 501.126 kb on - strand, within RR42_RS23025at 501.126 kb on - strand, within RR42_RS23025at 501.151 kb on - strand, within RR42_RS23025at 501.151 kb on - strand, within RR42_RS23025at 501.151 kb on - strand, within RR42_RS23025at 501.151 kb on - strand, within RR42_RS23025at 501.290 kb on + strand, within RR42_RS23025at 501.291 kb on - strand, within RR42_RS23025at 501.336 kb on - strand, within RR42_RS23025at 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.791 kb on + strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.793 kb on + strandat 501.793 kb on + strandat 501.794 kb on - strandat 501.823 kb on + strandat 501.839 kb on - strandat 501.931 kb on - strandat 501.931 kb on - strandat 501.937 kb on + strandat 502.146 kb on - strandat 502.146 kb on - strandat 502.164 kb on + strandat 502.269 kb on - strandat 502.414 kb on - strand, within RR42_RS23030at 502.414 kb on - strand, within RR42_RS23030at 502.468 kb on + strand, within RR42_RS23030at 502.469 kb on - strand, within RR42_RS23030at 502.469 kb on - strand, within RR42_RS23030at 502.469 kb on - strand, within RR42_RS23030at 502.469 kb on - strand, within RR42_RS23030at 502.469 kb on - strand, within RR42_RS23030at 502.481 kb on - strand, within RR42_RS23030at 502.501 kb on + strand, within RR42_RS23030at 502.613 kb on + strand, within RR42_RS23030at 502.613 kb on + strand, within RR42_RS23030at 502.613 kb on + strand, within RR42_RS23030at 502.614 kb on - strand, within RR42_RS23030at 502.665 kb on + strandat 502.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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498,979 + RR42_RS23020 0.22 -1.5
498,979 + RR42_RS23020 0.22 -1.1
498,980 - RR42_RS23020 0.22 +1.6
498,997 + RR42_RS23020 0.24 -0.9
499,180 + RR42_RS23020 0.43 +0.4
499,180 + RR42_RS23020 0.43 -0.6
499,181 - RR42_RS23020 0.43 +0.4
499,267 + RR42_RS23020 0.51 -0.6
499,267 + RR42_RS23020 0.51 -3.0
499,267 + RR42_RS23020 0.51 +0.0
499,267 + RR42_RS23020 0.51 +0.2
499,267 + RR42_RS23020 0.51 +0.8
499,268 - RR42_RS23020 0.52 -0.1
499,268 - RR42_RS23020 0.52 +0.0
499,272 + RR42_RS23020 0.52 -0.3
499,273 - RR42_RS23020 0.52 +0.8
499,273 - RR42_RS23020 0.52 -0.4
499,364 - RR42_RS23020 0.61 -0.4
499,412 + RR42_RS23020 0.66 +0.3
499,413 - RR42_RS23020 0.66 -0.8
499,413 - RR42_RS23020 0.66 +0.4
499,413 - RR42_RS23020 0.66 +0.4
499,511 + RR42_RS23020 0.76 +0.4
499,996 + -0.2
499,996 + -1.6
500,235 + RR42_RS23025 0.20 +0.4
500,235 + RR42_RS23025 0.20 +0.3
500,235 + RR42_RS23025 0.20 +0.4
500,235 + RR42_RS23025 0.20 -0.4
500,235 + RR42_RS23025 0.20 +0.2
500,236 - RR42_RS23025 0.20 -2.1
500,236 - RR42_RS23025 0.20 -0.1
500,236 - RR42_RS23025 0.20 -0.6
500,236 - RR42_RS23025 0.20 +0.0
500,236 - RR42_RS23025 0.20 -0.2
500,236 - RR42_RS23025 0.20 +1.1
500,236 - RR42_RS23025 0.20 +0.7
500,237 + RR42_RS23025 0.20 +0.7
500,237 + RR42_RS23025 0.20 +0.2
500,237 + RR42_RS23025 0.20 +0.0
500,237 + RR42_RS23025 0.20 +0.3
500,237 + RR42_RS23025 0.20 +0.2
500,237 + RR42_RS23025 0.20 -0.5
500,237 + RR42_RS23025 0.20 -0.1
500,237 + RR42_RS23025 0.20 +1.2
500,237 + RR42_RS23025 0.20 +1.2
500,237 + RR42_RS23025 0.20 +1.3
500,237 + RR42_RS23025 0.20 +0.7
500,237 + RR42_RS23025 0.20 +0.4
500,238 - RR42_RS23025 0.20 +0.9
500,238 - RR42_RS23025 0.20 +1.0
500,238 - RR42_RS23025 0.20 -1.0
500,238 - RR42_RS23025 0.20 +0.2
500,238 - RR42_RS23025 0.20 +1.2
500,727 - RR42_RS23025 0.47 +0.4
500,889 + RR42_RS23025 0.56 +0.3
500,889 + RR42_RS23025 0.56 +1.5
500,889 + RR42_RS23025 0.56 -1.5
500,889 + RR42_RS23025 0.56 +0.6
500,889 + RR42_RS23025 0.56 +0.1
500,890 - RR42_RS23025 0.56 +0.8
500,890 - RR42_RS23025 0.56 +1.2
500,890 - RR42_RS23025 0.56 -0.8
500,890 - RR42_RS23025 0.56 +0.3
500,890 - RR42_RS23025 0.56 +1.6
500,890 - RR42_RS23025 0.56 +1.4
500,892 - RR42_RS23025 0.56 +0.9
500,971 - RR42_RS23025 0.60 -1.4
500,971 - RR42_RS23025 0.60 -1.1
501,125 + RR42_RS23025 0.68 -2.1
501,126 - RR42_RS23025 0.68 +0.4
501,126 - RR42_RS23025 0.68 -0.8
501,126 - RR42_RS23025 0.68 +0.7
501,126 - RR42_RS23025 0.68 +1.0
501,126 - RR42_RS23025 0.68 -0.5
501,151 - RR42_RS23025 0.70 -0.7
501,151 - RR42_RS23025 0.70 -1.6
501,151 - RR42_RS23025 0.70 -0.6
501,151 - RR42_RS23025 0.70 -2.0
501,290 + RR42_RS23025 0.77 -1.1
501,291 - RR42_RS23025 0.77 -1.2
501,336 - RR42_RS23025 0.80 +1.0
501,791 + +0.9
501,791 + +0.4
501,791 + -0.6
501,791 + +0.0
501,791 + -0.2
501,791 + -0.4
501,791 + -0.0
501,791 + -0.8
501,791 + -1.1
501,791 + +1.4
501,791 + -1.2
501,791 + +0.8
501,792 - -0.4
501,792 - -1.0
501,792 - -0.3
501,792 - +0.3
501,792 - +0.2
501,792 - +0.7
501,792 - -1.7
501,792 - -0.4
501,793 + -0.1
501,793 + -0.1
501,794 - +0.3
501,823 + -0.9
501,839 - +0.7
501,931 - +0.1
501,931 - +0.0
501,937 + -2.1
502,146 - -0.2
502,146 - -0.3
502,164 + +1.3
502,269 - -0.6
502,414 - RR42_RS23030 0.23 +0.5
502,414 - RR42_RS23030 0.23 -0.5
502,468 + RR42_RS23030 0.37 -0.9
502,469 - RR42_RS23030 0.38 -0.7
502,469 - RR42_RS23030 0.38 +0.6
502,469 - RR42_RS23030 0.38 +0.4
502,469 - RR42_RS23030 0.38 -0.8
502,469 - RR42_RS23030 0.38 -0.0
502,481 - RR42_RS23030 0.41 -0.6
502,501 + RR42_RS23030 0.46 -0.9
502,613 + RR42_RS23030 0.76 +0.4
502,613 + RR42_RS23030 0.76 +0.6
502,613 + RR42_RS23030 0.76 +0.9
502,614 - RR42_RS23030 0.77 -0.6
502,665 + -0.1
502,666 - +0.7

Or see this region's nucleotide sequence