Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22895

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22890 and RR42_RS22895 are separated by 287 nucleotidesRR42_RS22895 and RR42_RS22900 overlap by 4 nucleotides RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667 _RS22890 RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084 _RS22895 RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814 _RS22900 Position (kb) 467 468 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2at 467.033 kb on + strand, within RR42_RS22890at 467.033 kb on + strand, within RR42_RS22890at 467.034 kb on - strand, within RR42_RS22890at 467.124 kb on - strand, within RR42_RS22890at 467.141 kb on + strand, within RR42_RS22890at 467.142 kb on - strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.170 kb on + strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.502 kb on - strand, within RR42_RS22890at 467.752 kb on + strandat 468.372 kb on - strand, within RR42_RS22895at 468.400 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.470 kb on + strand, within RR42_RS22895at 468.470 kb on + strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.574 kb on - strand, within RR42_RS22895at 468.606 kb on + strand, within RR42_RS22895at 468.606 kb on + strand, within RR42_RS22895at 468.607 kb on - strand, within RR42_RS22895at 468.630 kb on + strand, within RR42_RS22895at 468.951 kb on + strand, within RR42_RS22895at 468.951 kb on + strand, within RR42_RS22895at 468.951 kb on + strand, within RR42_RS22895at 468.952 kb on - strand, within RR42_RS22895at 468.965 kb on - strand, within RR42_RS22895at 469.722 kb on - strand, within RR42_RS22895at 469.722 kb on - strand, within RR42_RS22895at 469.809 kb on + strand, within RR42_RS22895at 470.414 kb on + strand, within RR42_RS22900at 470.513 kb on + strand, within RR42_RS22900at 470.550 kb on - strand, within RR42_RS22900at 470.622 kb on + strand, within RR42_RS22900at 470.623 kb on - strand, within RR42_RS22900at 470.642 kb on + strand, within RR42_RS22900at 470.673 kb on + strand, within RR42_RS22900at 470.673 kb on + strand, within RR42_RS22900at 470.674 kb on - strand, within RR42_RS22900at 470.804 kb on + strand, within RR42_RS22900at 470.804 kb on + strand, within RR42_RS22900at 470.805 kb on - strand, within RR42_RS22900at 470.874 kb on - strand, within RR42_RS22900at 470.888 kb on + strand, within RR42_RS22900at 470.939 kb on + strand, within RR42_RS22900at 470.940 kb on - strand, within RR42_RS22900at 470.957 kb on + strand, within RR42_RS22900at 470.957 kb on + strand, within RR42_RS22900at 470.958 kb on - strand, within RR42_RS22900at 470.958 kb on - strand, within RR42_RS22900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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467,033 + RR42_RS22890 0.13 +0.1
467,033 + RR42_RS22890 0.13 -1.7
467,034 - RR42_RS22890 0.13 +0.0
467,124 - RR42_RS22890 0.26 +0.7
467,141 + RR42_RS22890 0.28 +0.4
467,142 - RR42_RS22890 0.28 -1.5
467,166 + RR42_RS22890 0.31 -1.3
467,166 + RR42_RS22890 0.31 +0.4
467,166 + RR42_RS22890 0.31 -1.4
467,166 + RR42_RS22890 0.31 -0.1
467,170 + RR42_RS22890 0.32 +0.8
467,171 - RR42_RS22890 0.32 -2.1
467,171 - RR42_RS22890 0.32 +0.4
467,495 + RR42_RS22890 0.76 -1.7
467,495 + RR42_RS22890 0.76 -1.0
467,502 - RR42_RS22890 0.77 +0.9
467,752 + -1.6
468,372 - RR42_RS22895 0.20 -0.1
468,400 + RR42_RS22895 0.21 +0.6
468,468 + RR42_RS22895 0.24 +0.1
468,468 + RR42_RS22895 0.24 -1.9
468,468 + RR42_RS22895 0.24 +0.0
468,468 + RR42_RS22895 0.24 -0.9
468,468 + RR42_RS22895 0.24 +0.8
468,470 + RR42_RS22895 0.24 -1.2
468,470 + RR42_RS22895 0.24 -0.2
468,471 - RR42_RS22895 0.24 +0.2
468,471 - RR42_RS22895 0.24 +1.8
468,471 - RR42_RS22895 0.24 +0.9
468,574 - RR42_RS22895 0.29 +0.4
468,606 + RR42_RS22895 0.31 -0.3
468,606 + RR42_RS22895 0.31 +0.3
468,607 - RR42_RS22895 0.31 -0.3
468,630 + RR42_RS22895 0.32 +0.0
468,951 + RR42_RS22895 0.47 +0.3
468,951 + RR42_RS22895 0.47 -1.0
468,951 + RR42_RS22895 0.47 +0.0
468,952 - RR42_RS22895 0.47 -2.6
468,965 - RR42_RS22895 0.47 -0.6
469,722 - RR42_RS22895 0.83 -0.2
469,722 - RR42_RS22895 0.83 -1.2
469,809 + RR42_RS22895 0.87 +0.1
470,414 + RR42_RS22900 0.19 -0.5
470,513 + RR42_RS22900 0.25 -1.1
470,550 - RR42_RS22900 0.27 +0.5
470,622 + RR42_RS22900 0.31 +0.7
470,623 - RR42_RS22900 0.31 -1.1
470,642 + RR42_RS22900 0.32 -0.3
470,673 + RR42_RS22900 0.34 +1.2
470,673 + RR42_RS22900 0.34 +0.3
470,674 - RR42_RS22900 0.34 +1.6
470,804 + RR42_RS22900 0.42 +0.2
470,804 + RR42_RS22900 0.42 -0.4
470,805 - RR42_RS22900 0.42 +0.0
470,874 - RR42_RS22900 0.46 +0.1
470,888 + RR42_RS22900 0.47 +0.7
470,939 + RR42_RS22900 0.49 -1.7
470,940 - RR42_RS22900 0.50 -0.6
470,957 + RR42_RS22900 0.51 +0.4
470,957 + RR42_RS22900 0.51 -0.3
470,958 - RR42_RS22900 0.51 +1.6
470,958 - RR42_RS22900 0.51 +0.3

Or see this region's nucleotide sequence