Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22485

Experiment: R2A with Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22480 and RR42_RS22485 are separated by 54 nucleotidesRR42_RS22485 and RR42_RS22490 are separated by 304 nucleotides RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579 _RS22480 RR42_RS22485: RR42_RS22485 - MBL fold metallo-hydrolase, at 381,634 to 382,593 _RS22485 RR42_RS22490: RR42_RS22490 - IclR family transcriptional regulator, at 382,898 to 383,725 _RS22490 Position (kb) 381 382 383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.699 kb on + strand, within RR42_RS22480at 381.047 kb on + strand, within RR42_RS22480at 381.048 kb on - strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.197 kb on + strand, within RR42_RS22480at 381.197 kb on + strand, within RR42_RS22480at 381.198 kb on - strand, within RR42_RS22480at 381.260 kb on + strand, within RR42_RS22480at 381.260 kb on + strand, within RR42_RS22480at 381.261 kb on - strand, within RR42_RS22480at 381.617 kb on + strandat 381.752 kb on + strand, within RR42_RS22485at 381.752 kb on + strand, within RR42_RS22485at 381.752 kb on + strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.882 kb on - strand, within RR42_RS22485at 382.028 kb on + strand, within RR42_RS22485at 382.029 kb on - strand, within RR42_RS22485at 382.029 kb on - strand, within RR42_RS22485at 382.277 kb on + strand, within RR42_RS22485at 382.278 kb on - strand, within RR42_RS22485at 382.322 kb on + strand, within RR42_RS22485at 382.323 kb on - strand, within RR42_RS22485at 382.356 kb on - strand, within RR42_RS22485at 382.373 kb on + strand, within RR42_RS22485at 382.374 kb on - strand, within RR42_RS22485at 382.512 kb on - strandat 382.517 kb on + strandat 382.517 kb on + strandat 382.518 kb on - strandat 382.695 kb on + strandat 382.696 kb on - strandat 382.696 kb on - strandat 382.696 kb on - strandat 382.696 kb on - strandat 382.696 kb on - strandat 382.697 kb on + strandat 382.697 kb on + strandat 382.698 kb on - strandat 382.698 kb on - strandat 382.698 kb on - strandat 382.698 kb on - strandat 382.698 kb on - strandat 382.698 kb on - strandat 382.728 kb on + strandat 382.798 kb on - strandat 382.869 kb on + strandat 382.869 kb on + strandat 382.869 kb on + strandat 382.870 kb on - strandat 382.870 kb on - strandat 382.870 kb on - strandat 382.872 kb on + strandat 382.872 kb on + strandat 382.872 kb on + strandat 382.873 kb on - strandat 382.873 kb on - strandat 382.873 kb on - strandat 382.873 kb on - strandat 383.093 kb on + strand, within RR42_RS22490at 383.093 kb on + strand, within RR42_RS22490at 383.093 kb on + strand, within RR42_RS22490at 383.093 kb on + strand, within RR42_RS22490at 383.093 kb on + strand, within RR42_RS22490at 383.094 kb on - strand, within RR42_RS22490at 383.189 kb on + strand, within RR42_RS22490at 383.189 kb on + strand, within RR42_RS22490at 383.190 kb on - strand, within RR42_RS22490at 383.190 kb on - strand, within RR42_RS22490at 383.310 kb on - strand, within RR42_RS22490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
remove
380,698 - RR42_RS22480 0.49 -2.1
380,698 - RR42_RS22480 0.49 -0.6
380,698 - RR42_RS22480 0.49 -0.2
380,699 + RR42_RS22480 0.49 +1.0
381,047 + RR42_RS22480 0.69 +1.0
381,048 - RR42_RS22480 0.69 -0.2
381,194 + RR42_RS22480 0.78 +0.4
381,194 + RR42_RS22480 0.78 -1.9
381,194 + RR42_RS22480 0.78 +3.0
381,194 + RR42_RS22480 0.78 -1.3
381,194 + RR42_RS22480 0.78 -1.2
381,194 + RR42_RS22480 0.78 +1.1
381,195 - RR42_RS22480 0.78 +0.0
381,195 - RR42_RS22480 0.78 -0.4
381,195 - RR42_RS22480 0.78 +0.5
381,197 + RR42_RS22480 0.78 -0.8
381,197 + RR42_RS22480 0.78 -1.0
381,198 - RR42_RS22480 0.78 -0.4
381,260 + RR42_RS22480 0.82 -0.5
381,260 + RR42_RS22480 0.82 +0.4
381,261 - RR42_RS22480 0.82 -0.3
381,617 + -1.1
381,752 + RR42_RS22485 0.12 +0.0
381,752 + RR42_RS22485 0.12 -0.4
381,752 + RR42_RS22485 0.12 -1.6
381,753 - RR42_RS22485 0.12 -0.8
381,753 - RR42_RS22485 0.12 +0.8
381,753 - RR42_RS22485 0.12 -1.0
381,753 - RR42_RS22485 0.12 -0.2
381,753 - RR42_RS22485 0.12 -1.9
381,882 - RR42_RS22485 0.26 -0.4
382,028 + RR42_RS22485 0.41 -1.0
382,029 - RR42_RS22485 0.41 -1.3
382,029 - RR42_RS22485 0.41 -0.5
382,277 + RR42_RS22485 0.67 +2.0
382,278 - RR42_RS22485 0.67 +0.7
382,322 + RR42_RS22485 0.72 -0.7
382,323 - RR42_RS22485 0.72 +1.0
382,356 - RR42_RS22485 0.75 +1.4
382,373 + RR42_RS22485 0.77 +1.0
382,374 - RR42_RS22485 0.77 +1.0
382,512 - -1.7
382,517 + +0.1
382,517 + +1.0
382,518 - +0.9
382,695 + +0.0
382,696 - -0.7
382,696 - -1.1
382,696 - -0.3
382,696 - +0.5
382,696 - +0.2
382,697 + -0.6
382,697 + +0.4
382,698 - -0.1
382,698 - -2.2
382,698 - -0.2
382,698 - -0.6
382,698 - -1.1
382,698 - -0.6
382,728 + -0.6
382,798 - +0.0
382,869 + +1.0
382,869 + -1.0
382,869 + -1.5
382,870 - -0.7
382,870 - -0.6
382,870 - -2.6
382,872 + -1.1
382,872 + -0.1
382,872 + -0.2
382,873 - +1.4
382,873 - -2.1
382,873 - -1.3
382,873 - +0.7
383,093 + RR42_RS22490 0.24 -1.0
383,093 + RR42_RS22490 0.24 -1.0
383,093 + RR42_RS22490 0.24 +0.4
383,093 + RR42_RS22490 0.24 -0.8
383,093 + RR42_RS22490 0.24 +1.0
383,094 - RR42_RS22490 0.24 +0.0
383,189 + RR42_RS22490 0.35 -0.1
383,189 + RR42_RS22490 0.35 +0.8
383,190 - RR42_RS22490 0.35 -0.4
383,190 - RR42_RS22490 0.35 -0.3
383,310 - RR42_RS22490 0.50 +1.7

Or see this region's nucleotide sequence