Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21655

Experiment: R2A with Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21645 and RR42_RS21650 are separated by 43 nucleotidesRR42_RS21650 and RR42_RS21655 are separated by 162 nucleotidesRR42_RS21655 and RR42_RS21660 are separated by 7 nucleotidesRR42_RS21660 and RR42_RS21665 are separated by 106 nucleotides RR42_RS21645: RR42_RS21645 - N-carbamoylsarcosine amidase, at 185,451 to 186,092 _RS21645 RR42_RS21650: RR42_RS21650 - TetR family transcriptional regulator, at 186,136 to 186,873 _RS21650 RR42_RS21655: RR42_RS21655 - aldehyde dehydrogenase, at 187,036 to 189,300 _RS21655 RR42_RS21660: RR42_RS21660 - MarR family transcriptional regulator, at 189,308 to 189,820 _RS21660 RR42_RS21665: RR42_RS21665 - cobalt transporter, at 189,927 to 190,907 _RS21665 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.090 kb on + strandat 186.243 kb on + strand, within RR42_RS21650at 186.318 kb on + strand, within RR42_RS21650at 186.318 kb on + strand, within RR42_RS21650at 186.319 kb on - strand, within RR42_RS21650at 186.336 kb on - strand, within RR42_RS21650at 186.366 kb on - strand, within RR42_RS21650at 186.366 kb on - strand, within RR42_RS21650at 186.449 kb on + strand, within RR42_RS21650at 186.449 kb on + strand, within RR42_RS21650at 186.548 kb on + strand, within RR42_RS21650at 186.549 kb on - strand, within RR42_RS21650at 186.551 kb on + strand, within RR42_RS21650at 186.551 kb on + strand, within RR42_RS21650at 186.552 kb on - strand, within RR42_RS21650at 186.644 kb on + strand, within RR42_RS21650at 186.644 kb on + strand, within RR42_RS21650at 186.644 kb on + strand, within RR42_RS21650at 186.692 kb on + strand, within RR42_RS21650at 186.693 kb on - strand, within RR42_RS21650at 186.693 kb on - strand, within RR42_RS21650at 186.695 kb on + strand, within RR42_RS21650at 186.698 kb on + strand, within RR42_RS21650at 186.698 kb on + strand, within RR42_RS21650at 186.698 kb on + strand, within RR42_RS21650at 186.699 kb on - strand, within RR42_RS21650at 186.699 kb on - strand, within RR42_RS21650at 186.699 kb on - strand, within RR42_RS21650at 186.699 kb on - strand, within RR42_RS21650at 186.699 kb on - strand, within RR42_RS21650at 186.873 kb on + strandat 186.873 kb on + strandat 186.873 kb on + strandat 186.874 kb on - strandat 186.883 kb on - strandat 186.883 kb on - strandat 186.886 kb on + strandat 186.886 kb on + strandat 186.887 kb on - strandat 186.910 kb on - strandat 186.910 kb on - strandat 186.911 kb on + strandat 187.531 kb on + strand, within RR42_RS21655at 187.641 kb on + strand, within RR42_RS21655at 187.729 kb on + strand, within RR42_RS21655at 187.730 kb on - strand, within RR42_RS21655at 188.066 kb on - strand, within RR42_RS21655at 188.111 kb on - strand, within RR42_RS21655at 188.239 kb on + strand, within RR42_RS21655at 188.536 kb on + strand, within RR42_RS21655at 188.542 kb on + strand, within RR42_RS21655at 188.831 kb on - strand, within RR42_RS21655at 188.841 kb on + strand, within RR42_RS21655at 188.841 kb on + strand, within RR42_RS21655at 189.309 kb on + strandat 189.966 kb on + strandat 189.968 kb on + strandat 189.969 kb on - strandat 189.969 kb on - strandat 189.969 kb on - strandat 189.969 kb on - strandat 190.146 kb on + strand, within RR42_RS21665at 190.146 kb on + strand, within RR42_RS21665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
remove
186,090 + -1.3
186,243 + RR42_RS21650 0.14 -1.4
186,318 + RR42_RS21650 0.25 -2.8
186,318 + RR42_RS21650 0.25 -0.7
186,319 - RR42_RS21650 0.25 -0.2
186,336 - RR42_RS21650 0.27 +0.7
186,366 - RR42_RS21650 0.31 +0.7
186,366 - RR42_RS21650 0.31 -0.8
186,449 + RR42_RS21650 0.42 +1.4
186,449 + RR42_RS21650 0.42 -0.5
186,548 + RR42_RS21650 0.56 -0.4
186,549 - RR42_RS21650 0.56 +0.6
186,551 + RR42_RS21650 0.56 -0.7
186,551 + RR42_RS21650 0.56 -0.6
186,552 - RR42_RS21650 0.56 +0.8
186,644 + RR42_RS21650 0.69 -1.2
186,644 + RR42_RS21650 0.69 +0.5
186,644 + RR42_RS21650 0.69 -0.4
186,692 + RR42_RS21650 0.75 -0.4
186,693 - RR42_RS21650 0.75 +2.5
186,693 - RR42_RS21650 0.75 -0.1
186,695 + RR42_RS21650 0.76 +0.9
186,698 + RR42_RS21650 0.76 +0.1
186,698 + RR42_RS21650 0.76 +1.7
186,698 + RR42_RS21650 0.76 -0.7
186,699 - RR42_RS21650 0.76 -0.0
186,699 - RR42_RS21650 0.76 +0.6
186,699 - RR42_RS21650 0.76 -0.9
186,699 - RR42_RS21650 0.76 +1.0
186,699 - RR42_RS21650 0.76 +0.9
186,873 + +1.0
186,873 + -2.4
186,873 + -1.0
186,874 - +1.1
186,883 - -0.9
186,883 - +0.3
186,886 + +0.5
186,886 + +1.4
186,887 - +0.2
186,910 - -0.5
186,910 - +0.3
186,911 + -0.1
187,531 + RR42_RS21655 0.22 -1.6
187,641 + RR42_RS21655 0.27 -1.8
187,729 + RR42_RS21655 0.31 +1.0
187,730 - RR42_RS21655 0.31 -1.0
188,066 - RR42_RS21655 0.45 +2.0
188,111 - RR42_RS21655 0.47 -1.3
188,239 + RR42_RS21655 0.53 -0.9
188,536 + RR42_RS21655 0.66 -1.7
188,542 + RR42_RS21655 0.66 -0.2
188,831 - RR42_RS21655 0.79 -0.8
188,841 + RR42_RS21655 0.80 -0.3
188,841 + RR42_RS21655 0.80 -0.7
189,309 + -2.1
189,966 + +1.0
189,968 + -0.4
189,969 - -1.1
189,969 - -2.2
189,969 - -0.1
189,969 - -0.8
190,146 + RR42_RS21665 0.22 -0.8
190,146 + RR42_RS21665 0.22 -1.8

Or see this region's nucleotide sequence