Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21585

Experiment: R2A with Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21580 and RR42_RS21585 are separated by 45 nucleotidesRR42_RS21585 and RR42_RS21590 are separated by 457 nucleotides RR42_RS21580: RR42_RS21580 - cysteine desulfurase, at 167,020 to 168,204 _RS21580 RR42_RS21585: RR42_RS21585 - membrane protein, at 168,250 to 169,857 _RS21585 RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065 _RS21590 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2 3at 167.264 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.531 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580at 168.035 kb on + strand, within RR42_RS21580at 168.035 kb on + strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.062 kb on + strand, within RR42_RS21580at 168.152 kb on + strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.394 kb on + strandat 168.561 kb on - strand, within RR42_RS21585at 168.722 kb on + strand, within RR42_RS21585at 168.740 kb on + strand, within RR42_RS21585at 168.915 kb on - strand, within RR42_RS21585at 168.932 kb on + strand, within RR42_RS21585at 168.966 kb on + strand, within RR42_RS21585at 168.967 kb on - strand, within RR42_RS21585at 169.017 kb on - strand, within RR42_RS21585at 169.173 kb on + strand, within RR42_RS21585at 169.175 kb on + strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.455 kb on - strand, within RR42_RS21585at 169.535 kb on + strand, within RR42_RS21585at 169.863 kb on + strandat 169.864 kb on - strandat 169.984 kb on + strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 170.141 kb on + strandat 170.142 kb on - strandat 170.236 kb on + strandat 170.237 kb on - strandat 170.237 kb on - strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.464 kb on + strandat 170.464 kb on + strandat 170.579 kb on + strandat 170.606 kb on + strand, within RR42_RS21590at 170.690 kb on + strand, within RR42_RS21590at 170.742 kb on - strand, within RR42_RS21590at 170.829 kb on - strand, within RR42_RS21590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
remove
167,264 + RR42_RS21580 0.21 -2.1
167,468 + RR42_RS21580 0.38 -0.2
167,468 + RR42_RS21580 0.38 +1.0
167,469 - RR42_RS21580 0.38 -0.8
167,469 - RR42_RS21580 0.38 +1.7
167,531 + RR42_RS21580 0.43 +0.3
167,943 + RR42_RS21580 0.78 +1.0
167,943 + RR42_RS21580 0.78 +0.7
167,943 + RR42_RS21580 0.78 -0.4
167,944 - RR42_RS21580 0.78 +0.1
167,944 - RR42_RS21580 0.78 -0.3
168,035 + RR42_RS21580 0.86 +0.2
168,035 + RR42_RS21580 0.86 -1.6
168,036 - RR42_RS21580 0.86 -0.2
168,036 - RR42_RS21580 0.86 -2.0
168,036 - RR42_RS21580 0.86 -0.6
168,062 + RR42_RS21580 0.88 -0.5
168,152 + -0.9
168,153 - -0.2
168,153 - -0.1
168,153 - +0.0
168,153 - +0.5
168,251 + +0.5
168,251 + -0.8
168,251 + -0.8
168,251 + +1.5
168,251 + +1.5
168,251 + -0.2
168,394 + +0.2
168,561 - RR42_RS21585 0.19 +0.3
168,722 + RR42_RS21585 0.29 +0.2
168,740 + RR42_RS21585 0.30 -1.3
168,915 - RR42_RS21585 0.41 -0.3
168,932 + RR42_RS21585 0.42 -1.2
168,966 + RR42_RS21585 0.45 -0.5
168,967 - RR42_RS21585 0.45 -0.3
169,017 - RR42_RS21585 0.48 +0.0
169,173 + RR42_RS21585 0.57 -0.1
169,175 + RR42_RS21585 0.58 +1.3
169,176 - RR42_RS21585 0.58 -0.0
169,176 - RR42_RS21585 0.58 +0.0
169,176 - RR42_RS21585 0.58 -0.2
169,176 - RR42_RS21585 0.58 -0.5
169,176 - RR42_RS21585 0.58 -0.5
169,454 + RR42_RS21585 0.75 +1.9
169,454 + RR42_RS21585 0.75 +0.7
169,454 + RR42_RS21585 0.75 -0.5
169,454 + RR42_RS21585 0.75 +0.1
169,454 + RR42_RS21585 0.75 +1.2
169,454 + RR42_RS21585 0.75 +0.0
169,455 - RR42_RS21585 0.75 -0.2
169,535 + RR42_RS21585 0.80 -0.5
169,863 + +1.8
169,864 - +0.5
169,984 + -0.7
169,985 - +1.2
169,985 - +1.3
169,985 - +1.2
169,985 - +0.7
169,985 - +1.1
169,985 - +0.9
169,985 - +3.2
169,985 - +0.7
169,985 - -1.0
169,985 - +0.0
169,985 - +0.1
170,141 + -0.4
170,142 - +1.5
170,236 + +0.6
170,237 - +2.0
170,237 - +2.1
170,238 + +0.5
170,238 + -1.7
170,238 + -0.0
170,238 + +0.7
170,239 - +1.5
170,239 - +2.1
170,239 - +1.4
170,239 - +2.3
170,239 - +1.4
170,239 - +1.2
170,239 - +3.5
170,239 - +0.8
170,239 - -1.0
170,239 - +0.9
170,239 - +1.3
170,239 - +1.2
170,464 + +2.0
170,464 + +0.1
170,579 + -0.3
170,606 + RR42_RS21590 0.11 +0.5
170,690 + RR42_RS21590 0.14 +0.5
170,742 - RR42_RS21590 0.16 +0.7
170,829 - RR42_RS21590 0.19 -1.7

Or see this region's nucleotide sequence