Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20130

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20125 and RR42_RS20130 are separated by 203 nucleotidesRR42_RS20130 and RR42_RS20135 are separated by 574 nucleotides RR42_RS20125: RR42_RS20125 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 4,349,292 to 4,353,293 _RS20125 RR42_RS20130: RR42_RS20130 - primosome assembly protein PriA, at 4,353,497 to 4,355,800 _RS20130 RR42_RS20135: RR42_RS20135 - uroporphyrinogen decarboxylase, at 4,356,375 to 4,357,472 _RS20135 Position (kb) 4353 4354 4355 4356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4352.618 kb on + strand, within RR42_RS20125at 4352.618 kb on + strand, within RR42_RS20125at 4352.619 kb on - strand, within RR42_RS20125at 4352.619 kb on - strand, within RR42_RS20125at 4353.057 kb on + strandat 4353.175 kb on + strandat 4353.175 kb on + strandat 4353.176 kb on - strandat 4353.309 kb on + strandat 4353.310 kb on - strandat 4353.310 kb on - strandat 4353.310 kb on - strandat 4353.365 kb on + strandat 4353.365 kb on + strandat 4353.366 kb on - strandat 4353.392 kb on + strandat 4353.396 kb on + strandat 4353.397 kb on - strandat 4355.843 kb on + strandat 4355.844 kb on - strandat 4355.937 kb on + strandat 4355.937 kb on + strandat 4355.938 kb on - strandat 4355.938 kb on - strandat 4355.943 kb on - strandat 4355.962 kb on + strandat 4355.963 kb on - strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.973 kb on + strandat 4355.974 kb on - strandat 4355.974 kb on - strandat 4355.974 kb on - strandat 4355.974 kb on - strandat 4356.014 kb on - strandat 4356.014 kb on - strandat 4356.111 kb on + strandat 4356.112 kb on - strandat 4356.192 kb on + strandat 4356.192 kb on + strandat 4356.193 kb on - strandat 4356.193 kb on - strandat 4356.237 kb on + strandat 4356.247 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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4,352,618 + RR42_RS20125 0.83 +0.7
4,352,618 + RR42_RS20125 0.83 +0.1
4,352,619 - RR42_RS20125 0.83 -2.0
4,352,619 - RR42_RS20125 0.83 -0.2
4,353,057 + +1.3
4,353,175 + -0.3
4,353,175 + +0.0
4,353,176 - -0.2
4,353,309 + +3.1
4,353,310 - -0.2
4,353,310 - +0.0
4,353,310 - +0.9
4,353,365 + -1.1
4,353,365 + +0.4
4,353,366 - -0.0
4,353,392 + -0.7
4,353,396 + -0.9
4,353,397 - +0.1
4,355,843 + +1.3
4,355,844 - -0.0
4,355,937 + -2.5
4,355,937 + -1.7
4,355,938 - +2.1
4,355,938 - -0.0
4,355,943 - -1.9
4,355,962 + -0.5
4,355,963 - -1.0
4,355,973 + -0.8
4,355,973 + -0.9
4,355,973 + +1.1
4,355,973 + -0.0
4,355,973 + +0.5
4,355,973 + +0.7
4,355,973 + +1.1
4,355,973 + -2.6
4,355,974 - -0.7
4,355,974 - +0.8
4,355,974 - +0.2
4,355,974 - +0.3
4,356,014 - +0.6
4,356,014 - -0.9
4,356,111 + -0.8
4,356,112 - +0.7
4,356,192 + -1.2
4,356,192 + +1.5
4,356,193 - -0.4
4,356,193 - -1.0
4,356,237 + +0.2
4,356,247 + -0.7

Or see this region's nucleotide sequence