Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20055

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20045 and RR42_RS20050 are separated by 66 nucleotidesRR42_RS20050 and RR42_RS20055 are separated by 104 nucleotidesRR42_RS20055 and RR42_RS20060 are separated by 592 nucleotides RR42_RS20045: RR42_RS20045 - hypothetical protein, at 4,330,393 to 4,331,025 _RS20045 RR42_RS20050: RR42_RS20050 - hypothetical protein, at 4,331,092 to 4,331,493 _RS20050 RR42_RS20055: RR42_RS20055 - ATP-dependent DNA helicase Rep, at 4,331,598 to 4,333,703 _RS20055 RR42_RS20060: RR42_RS20060 - glycine cleavage system protein T, at 4,334,296 to 4,335,435 _RS20060 Position (kb) 4331 4332 4333 4334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4330.654 kb on - strand, within RR42_RS20045at 4330.782 kb on + strand, within RR42_RS20045at 4330.782 kb on + strand, within RR42_RS20045at 4330.783 kb on - strand, within RR42_RS20045at 4330.783 kb on - strand, within RR42_RS20045at 4331.024 kb on - strandat 4331.050 kb on - strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.153 kb on - strand, within RR42_RS20050at 4331.172 kb on + strand, within RR42_RS20050at 4331.207 kb on + strand, within RR42_RS20050at 4331.208 kb on - strand, within RR42_RS20050at 4331.208 kb on - strand, within RR42_RS20050at 4331.472 kb on - strandat 4331.472 kb on - strandat 4331.498 kb on - strandat 4331.532 kb on + strandat 4331.532 kb on + strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.537 kb on + strandat 4331.537 kb on + strandat 4331.538 kb on - strandat 4331.542 kb on + strandat 4331.543 kb on - strandat 4331.543 kb on - strandat 4331.553 kb on + strandat 4331.752 kb on + strandat 4331.752 kb on + strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.203 kb on - strand, within RR42_RS20055at 4332.208 kb on + strand, within RR42_RS20055at 4332.208 kb on + strand, within RR42_RS20055at 4332.217 kb on + strand, within RR42_RS20055at 4332.217 kb on + strand, within RR42_RS20055at 4332.218 kb on - strand, within RR42_RS20055at 4332.505 kb on + strand, within RR42_RS20055at 4332.505 kb on + strand, within RR42_RS20055at 4332.506 kb on - strand, within RR42_RS20055at 4332.506 kb on - strand, within RR42_RS20055at 4332.506 kb on - strand, within RR42_RS20055at 4332.506 kb on - strand, within RR42_RS20055at 4332.565 kb on + strand, within RR42_RS20055at 4332.565 kb on + strand, within RR42_RS20055at 4332.565 kb on + strand, within RR42_RS20055at 4332.566 kb on - strand, within RR42_RS20055at 4332.566 kb on - strand, within RR42_RS20055at 4332.566 kb on - strand, within RR42_RS20055at 4332.637 kb on + strand, within RR42_RS20055at 4332.637 kb on + strand, within RR42_RS20055at 4332.687 kb on + strand, within RR42_RS20055at 4332.688 kb on - strand, within RR42_RS20055at 4332.688 kb on - strand, within RR42_RS20055at 4332.841 kb on + strand, within RR42_RS20055at 4332.928 kb on + strand, within RR42_RS20055at 4332.928 kb on + strand, within RR42_RS20055at 4332.928 kb on + strand, within RR42_RS20055at 4332.928 kb on + strand, within RR42_RS20055at 4332.928 kb on + strand, within RR42_RS20055at 4332.929 kb on - strand, within RR42_RS20055at 4332.929 kb on - strand, within RR42_RS20055at 4332.929 kb on - strand, within RR42_RS20055at 4333.012 kb on + strand, within RR42_RS20055at 4333.036 kb on + strand, within RR42_RS20055at 4333.055 kb on - strand, within RR42_RS20055at 4333.055 kb on - strand, within RR42_RS20055at 4333.150 kb on + strand, within RR42_RS20055at 4333.164 kb on - strand, within RR42_RS20055at 4333.164 kb on - strand, within RR42_RS20055at 4333.171 kb on + strand, within RR42_RS20055at 4333.171 kb on + strand, within RR42_RS20055at 4333.171 kb on + strand, within RR42_RS20055at 4333.172 kb on - strand, within RR42_RS20055at 4333.172 kb on - strand, within RR42_RS20055at 4333.181 kb on - strand, within RR42_RS20055at 4333.852 kb on + strandat 4333.852 kb on + strandat 4333.983 kb on + strandat 4333.984 kb on - strandat 4334.053 kb on + strandat 4334.054 kb on - strandat 4334.164 kb on + strandat 4334.164 kb on + strandat 4334.164 kb on + strandat 4334.165 kb on - strandat 4334.165 kb on - strandat 4334.165 kb on - strandat 4334.176 kb on + strandat 4334.177 kb on - strandat 4334.177 kb on - strandat 4334.222 kb on - strandat 4334.326 kb on - strandat 4334.386 kb on + strandat 4334.386 kb on + strandat 4334.387 kb on - strandat 4334.387 kb on - strandat 4334.387 kb on - strandat 4334.387 kb on - strandat 4334.387 kb on - strandat 4334.551 kb on + strand, within RR42_RS20060at 4334.551 kb on + strand, within RR42_RS20060at 4334.551 kb on + strand, within RR42_RS20060at 4334.552 kb on - strand, within RR42_RS20060at 4334.552 kb on - strand, within RR42_RS20060at 4334.661 kb on + strand, within RR42_RS20060at 4334.661 kb on + strand, within RR42_RS20060at 4334.662 kb on - strand, within RR42_RS20060at 4334.697 kb on + strand, within RR42_RS20060at 4334.698 kb on - strand, within RR42_RS20060

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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4,330,654 - RR42_RS20045 0.41 +0.4
4,330,782 + RR42_RS20045 0.61 +0.6
4,330,782 + RR42_RS20045 0.61 -0.4
4,330,783 - RR42_RS20045 0.62 +0.2
4,330,783 - RR42_RS20045 0.62 +0.1
4,331,024 - +0.1
4,331,050 - +0.9
4,331,088 + +0.9
4,331,088 + -0.9
4,331,089 - -0.6
4,331,089 - -0.4
4,331,089 - -0.5
4,331,089 - +0.2
4,331,153 - RR42_RS20050 0.15 +0.5
4,331,172 + RR42_RS20050 0.20 -0.2
4,331,207 + RR42_RS20050 0.29 -0.7
4,331,208 - RR42_RS20050 0.29 -0.2
4,331,208 - RR42_RS20050 0.29 -0.7
4,331,472 - +0.5
4,331,472 - -0.3
4,331,498 - -2.1
4,331,532 + +0.1
4,331,532 + -1.8
4,331,533 - -0.3
4,331,533 - +0.8
4,331,533 - -0.0
4,331,533 - +0.4
4,331,537 + -2.1
4,331,537 + -0.6
4,331,538 - -0.2
4,331,542 + +0.6
4,331,543 - -0.2
4,331,543 - +1.1
4,331,553 + +1.4
4,331,752 + -2.0
4,331,752 + -1.1
4,331,753 - -1.7
4,331,753 - -0.2
4,331,753 - -0.2
4,331,753 - -1.2
4,331,753 - -1.4
4,331,753 - -1.7
4,331,823 + RR42_RS20055 0.11 +1.1
4,331,823 + RR42_RS20055 0.11 -0.9
4,331,823 + RR42_RS20055 0.11 -0.2
4,331,823 + RR42_RS20055 0.11 -0.6
4,331,823 + RR42_RS20055 0.11 -2.3
4,331,823 + RR42_RS20055 0.11 -0.7
4,331,823 + RR42_RS20055 0.11 -0.5
4,331,823 + RR42_RS20055 0.11 +0.7
4,331,824 - RR42_RS20055 0.11 +2.1
4,331,824 - RR42_RS20055 0.11 -0.7
4,331,824 - RR42_RS20055 0.11 -0.7
4,331,824 - RR42_RS20055 0.11 -1.6
4,331,824 - RR42_RS20055 0.11 -3.2
4,331,827 + RR42_RS20055 0.11 -0.3
4,331,827 + RR42_RS20055 0.11 -1.3
4,331,827 + RR42_RS20055 0.11 -1.1
4,331,827 + RR42_RS20055 0.11 +0.1
4,331,827 + RR42_RS20055 0.11 -0.6
4,331,827 + RR42_RS20055 0.11 -1.4
4,331,827 + RR42_RS20055 0.11 -2.1
4,331,827 + RR42_RS20055 0.11 -1.7
4,331,827 + RR42_RS20055 0.11 -1.2
4,331,827 + RR42_RS20055 0.11 -1.1
4,331,827 + RR42_RS20055 0.11 -0.9
4,331,827 + RR42_RS20055 0.11 +0.2
4,331,827 + RR42_RS20055 0.11 -1.9
4,331,827 + RR42_RS20055 0.11 +1.1
4,331,827 + RR42_RS20055 0.11 -1.3
4,331,828 - RR42_RS20055 0.11 -2.4
4,331,828 - RR42_RS20055 0.11 -0.2
4,331,828 - RR42_RS20055 0.11 -1.4
4,331,828 - RR42_RS20055 0.11 -1.0
4,331,828 - RR42_RS20055 0.11 -1.1
4,331,828 - RR42_RS20055 0.11 -0.4
4,331,828 - RR42_RS20055 0.11 -0.1
4,331,828 - RR42_RS20055 0.11 -1.3
4,331,828 - RR42_RS20055 0.11 -1.6
4,331,828 - RR42_RS20055 0.11 -1.5
4,331,828 - RR42_RS20055 0.11 -0.9
4,331,828 - RR42_RS20055 0.11 -1.1
4,331,828 - RR42_RS20055 0.11 -1.0
4,331,828 - RR42_RS20055 0.11 -1.4
4,331,828 - RR42_RS20055 0.11 -1.4
4,331,828 - RR42_RS20055 0.11 -0.2
4,332,202 + RR42_RS20055 0.29 -0.1
4,332,202 + RR42_RS20055 0.29 -1.9
4,332,202 + RR42_RS20055 0.29 -0.0
4,332,203 - RR42_RS20055 0.29 -1.6
4,332,208 + RR42_RS20055 0.29 -0.4
4,332,208 + RR42_RS20055 0.29 -0.0
4,332,217 + RR42_RS20055 0.29 -2.4
4,332,217 + RR42_RS20055 0.29 -0.2
4,332,218 - RR42_RS20055 0.29 -2.3
4,332,505 + RR42_RS20055 0.43 -0.7
4,332,505 + RR42_RS20055 0.43 -2.0
4,332,506 - RR42_RS20055 0.43 -0.8
4,332,506 - RR42_RS20055 0.43 -1.5
4,332,506 - RR42_RS20055 0.43 -0.6
4,332,506 - RR42_RS20055 0.43 -1.1
4,332,565 + RR42_RS20055 0.46 -1.3
4,332,565 + RR42_RS20055 0.46 +1.0
4,332,565 + RR42_RS20055 0.46 -2.1
4,332,566 - RR42_RS20055 0.46 -1.1
4,332,566 - RR42_RS20055 0.46 -0.5
4,332,566 - RR42_RS20055 0.46 -1.2
4,332,637 + RR42_RS20055 0.49 -1.2
4,332,637 + RR42_RS20055 0.49 -0.4
4,332,687 + RR42_RS20055 0.52 -0.3
4,332,688 - RR42_RS20055 0.52 -1.3
4,332,688 - RR42_RS20055 0.52 -0.5
4,332,841 + RR42_RS20055 0.59 -1.5
4,332,928 + RR42_RS20055 0.63 -0.8
4,332,928 + RR42_RS20055 0.63 -1.9
4,332,928 + RR42_RS20055 0.63 -1.2
4,332,928 + RR42_RS20055 0.63 +1.4
4,332,928 + RR42_RS20055 0.63 +1.7
4,332,929 - RR42_RS20055 0.63 -2.6
4,332,929 - RR42_RS20055 0.63 -2.0
4,332,929 - RR42_RS20055 0.63 -2.7
4,333,012 + RR42_RS20055 0.67 +0.1
4,333,036 + RR42_RS20055 0.68 -0.7
4,333,055 - RR42_RS20055 0.69 -1.2
4,333,055 - RR42_RS20055 0.69 -1.0
4,333,150 + RR42_RS20055 0.74 -2.2
4,333,164 - RR42_RS20055 0.74 -0.2
4,333,164 - RR42_RS20055 0.74 -1.2
4,333,171 + RR42_RS20055 0.75 -1.0
4,333,171 + RR42_RS20055 0.75 -0.2
4,333,171 + RR42_RS20055 0.75 -1.2
4,333,172 - RR42_RS20055 0.75 -2.2
4,333,172 - RR42_RS20055 0.75 -3.0
4,333,181 - RR42_RS20055 0.75 -0.4
4,333,852 + -2.6
4,333,852 + -1.0
4,333,983 + +0.8
4,333,984 - -0.3
4,334,053 + +0.7
4,334,054 - +0.2
4,334,164 + +0.5
4,334,164 + +0.1
4,334,164 + -2.2
4,334,165 - -0.4
4,334,165 - -0.4
4,334,165 - -0.7
4,334,176 + -1.5
4,334,177 - -0.5
4,334,177 - +1.0
4,334,222 - +1.1
4,334,326 - +0.2
4,334,386 + -0.4
4,334,386 + -0.1
4,334,387 - +0.3
4,334,387 - +1.5
4,334,387 - -0.7
4,334,387 - -0.3
4,334,387 - +0.6
4,334,551 + RR42_RS20060 0.22 -0.6
4,334,551 + RR42_RS20060 0.22 -0.5
4,334,551 + RR42_RS20060 0.22 -0.3
4,334,552 - RR42_RS20060 0.22 -0.0
4,334,552 - RR42_RS20060 0.22 +0.6
4,334,661 + RR42_RS20060 0.32 -1.4
4,334,661 + RR42_RS20060 0.32 +0.7
4,334,662 - RR42_RS20060 0.32 -0.1
4,334,697 + RR42_RS20060 0.35 -0.5
4,334,698 - RR42_RS20060 0.35 -2.7

Or see this region's nucleotide sequence