Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19305
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,169,175 | + | -1.1 | |||
4,169,176 | - | +0.3 | |||
4,169,176 | - | +1.7 | |||
4,169,176 | - | -1.3 | |||
4,169,176 | - | -0.3 | |||
4,169,176 | - | +0.3 | |||
4,169,266 | + | RR42_RS19310 | 0.13 | -0.9 | |
4,169,266 | + | RR42_RS19310 | 0.13 | -0.6 | |
4,169,570 | - | RR42_RS19310 | 0.29 | +2.1 | |
4,169,570 | - | RR42_RS19310 | 0.29 | -1.2 | |
4,169,570 | - | RR42_RS19310 | 0.29 | -1.9 | |
4,169,608 | + | RR42_RS19310 | 0.31 | -0.5 | |
4,169,609 | - | RR42_RS19310 | 0.32 | -3.0 | |
4,169,609 | - | RR42_RS19310 | 0.32 | +0.1 | |
4,169,613 | + | RR42_RS19310 | 0.32 | -0.7 | |
4,169,613 | + | RR42_RS19310 | 0.32 | +0.4 | |
4,169,613 | + | RR42_RS19310 | 0.32 | -1.9 | |
4,169,613 | + | RR42_RS19310 | 0.32 | -3.6 | |
4,169,614 | - | RR42_RS19310 | 0.32 | +3.1 | |
4,169,614 | - | RR42_RS19310 | 0.32 | -2.2 | |
4,169,660 | - | RR42_RS19310 | 0.34 | -1.9 | |
4,169,660 | - | RR42_RS19310 | 0.34 | -1.4 |
Or see this region's nucleotide sequence