Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19305

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19295 and RR42_RS19300 are separated by 119 nucleotidesRR42_RS19300 and RR42_RS19305 are separated by 226 nucleotidesRR42_RS19305 and RR42_RS19310 are separated by 355 nucleotides RR42_RS19295: RR42_RS19295 - elongation factor G, at 4,165,369 to 4,167,471 _RS19295 RR42_RS19300: RR42_RS19300 - 30S ribosomal protein S7, at 4,167,591 to 4,168,061 _RS19300 RR42_RS19305: RR42_RS19305 - 30S ribosomal protein S12, at 4,168,288 to 4,168,665 _RS19305 RR42_RS19310: RR42_RS19310 - ATP-dependent DNA helicase RecQ, at 4,169,021 to 4,170,886 _RS19310 Position (kb) 4168 4169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4169.175 kb on + strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.266 kb on + strand, within RR42_RS19310at 4169.266 kb on + strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.608 kb on + strand, within RR42_RS19310at 4169.609 kb on - strand, within RR42_RS19310at 4169.609 kb on - strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.614 kb on - strand, within RR42_RS19310at 4169.614 kb on - strand, within RR42_RS19310at 4169.660 kb on - strand, within RR42_RS19310at 4169.660 kb on - strand, within RR42_RS19310

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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4,169,175 + -1.1
4,169,176 - +0.3
4,169,176 - +1.7
4,169,176 - -1.3
4,169,176 - -0.3
4,169,176 - +0.3
4,169,266 + RR42_RS19310 0.13 -0.9
4,169,266 + RR42_RS19310 0.13 -0.6
4,169,570 - RR42_RS19310 0.29 +2.1
4,169,570 - RR42_RS19310 0.29 -1.2
4,169,570 - RR42_RS19310 0.29 -1.9
4,169,608 + RR42_RS19310 0.31 -0.5
4,169,609 - RR42_RS19310 0.32 -3.0
4,169,609 - RR42_RS19310 0.32 +0.1
4,169,613 + RR42_RS19310 0.32 -0.7
4,169,613 + RR42_RS19310 0.32 +0.4
4,169,613 + RR42_RS19310 0.32 -1.9
4,169,613 + RR42_RS19310 0.32 -3.6
4,169,614 - RR42_RS19310 0.32 +3.1
4,169,614 - RR42_RS19310 0.32 -2.2
4,169,660 - RR42_RS19310 0.34 -1.9
4,169,660 - RR42_RS19310 0.34 -1.4

Or see this region's nucleotide sequence