Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17835

Experiment: R2A with Cisplatin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cisplatin 0.001 mg/ml
3,856,051	+		RR42_RS17830	0.27	-0.5
3,856,051	+		RR42_RS17830	0.27	-1.0
3,856,052	-		RR42_RS17830	0.28	-0.4
3,856,102	+		RR42_RS17830	0.33	+1.1
3,856,117	+		RR42_RS17830	0.34	+0.1
3,856,117	+		RR42_RS17830	0.34	-1.4
3,856,117	+		RR42_RS17830	0.34	+1.7
3,856,117	+		RR42_RS17830	0.34	-0.9
3,856,118	-		RR42_RS17830	0.34	-1.2
3,856,118	-		RR42_RS17830	0.34	+0.6
3,856,118	-		RR42_RS17830	0.34	-1.5
3,856,255	+		RR42_RS17830	0.48	-0.1
3,856,256	-		RR42_RS17830	0.48	-0.8
3,856,519	+		RR42_RS17830	0.75	-0.2
3,856,519	+		RR42_RS17830	0.75	-0.1
3,856,520	-		RR42_RS17830	0.75	-0.2
3,856,520	-		RR42_RS17830	0.75	+0.5
3,856,691	-				+0.1
3,856,970	+				-0.5
3,856,970	+				-0.3
3,857,006	+				+0.4
3,857,007	-				-0.2
3,857,007	-				-0.6
3,857,007	-				-0.7
3,857,007	-				-0.9
3,857,150	+		RR42_RS17835	0.14	-0.7
3,857,150	+		RR42_RS17835	0.14	+0.4
3,857,157	-		RR42_RS17835	0.14	+0.4
3,857,288	+		RR42_RS17835	0.20	-0.9
3,857,289	-		RR42_RS17835	0.20	-0.3
3,857,289	-		RR42_RS17835	0.20	-1.6
3,857,289	-		RR42_RS17835	0.20	-0.1
3,857,289	-		RR42_RS17835	0.20	-0.2
3,857,414	+		RR42_RS17835	0.25	-0.9
3,857,414	+		RR42_RS17835	0.25	-0.7
3,857,414	+		RR42_RS17835	0.25	+2.1
3,857,414	+		RR42_RS17835	0.25	+2.1
3,857,437	+		RR42_RS17835	0.26	+0.6
3,857,437	+		RR42_RS17835	0.26	-0.4
3,857,564	+		RR42_RS17835	0.32	-0.8
3,858,049	+		RR42_RS17835	0.52	-0.1
3,858,049	+		RR42_RS17835	0.52	-0.5
3,858,049	+		RR42_RS17835	0.52	-0.7
3,858,050	-		RR42_RS17835	0.52	-1.7
3,858,077	+		RR42_RS17835	0.54	-0.7
3,858,077	+		RR42_RS17835	0.54	+0.3
3,858,077	+		RR42_RS17835	0.54	-0.0
3,858,078	-		RR42_RS17835	0.54	+1.3
3,858,078	-		RR42_RS17835	0.54	+1.4
3,858,078	-		RR42_RS17835	0.54	-0.9
3,858,174	+		RR42_RS17835	0.58	-0.7
3,858,174	+		RR42_RS17835	0.58	+0.5
3,858,175	-		RR42_RS17835	0.58	-1.8
3,858,336	+		RR42_RS17835	0.65	-2.0
3,858,369	-		RR42_RS17835	0.66	-0.9
3,858,369	-		RR42_RS17835	0.66	+0.1
3,858,617	+		RR42_RS17835	0.77	-0.1
3,858,618	-		RR42_RS17835	0.77	+1.5
3,858,618	-		RR42_RS17835	0.77	-1.2
3,858,630	-		RR42_RS17835	0.77	-0.6
3,858,704	+		RR42_RS17835	0.80	+0.3
3,858,704	+		RR42_RS17835	0.80	-1.6
3,858,704	+		RR42_RS17835	0.80	+0.0
3,858,704	+		RR42_RS17835	0.80	+0.0
3,858,705	-		RR42_RS17835	0.80	+0.0
3,858,705	-		RR42_RS17835	0.80	-0.3
3,858,705	-		RR42_RS17835	0.80	-0.3
3,858,776	+		RR42_RS17835	0.83	-0.3
3,858,777	-		RR42_RS17835	0.83	-1.3
3,859,161	+				+0.3
3,859,161	+				-0.7
3,859,162	-				+2.1
3,859,162	-				+0.2
3,859,164	-				+0.9
3,859,381	+				-1.1
3,859,381	+				+1.4
3,859,382	-				+0.8
3,859,429	+				-0.1
3,859,453	+		RR42_RS17840	0.11	+0.0
3,859,598	+		RR42_RS17840	0.27	+1.2
3,859,600	+		RR42_RS17840	0.27	-0.2
3,859,600	+		RR42_RS17840	0.27	-0.7
3,859,601	-		RR42_RS17840	0.27	+0.5
3,859,601	-		RR42_RS17840	0.27	+0.2
3,859,658	+		RR42_RS17840	0.33	+0.1
3,859,681	+		RR42_RS17840	0.36	+0.9
3,859,741	+		RR42_RS17840	0.42	-0.2
3,859,741	+		RR42_RS17840	0.42	-0.3
3,859,742	-		RR42_RS17840	0.43	-0.2
3,859,742	-		RR42_RS17840	0.43	-0.3
3,859,900	+		RR42_RS17840	0.60	-0.1
3,860,050	+		RR42_RS17840	0.76	-0.4
3,860,050	+		RR42_RS17840	0.76	-0.6
3,860,050	+		RR42_RS17840	0.76	+0.0
3,860,056	+		RR42_RS17840	0.77	+0.4
3,860,056	+		RR42_RS17840	0.77	-0.6
3,860,057	-		RR42_RS17840	0.77	+0.5
3,860,057	-		RR42_RS17840	0.77	-0.9
3,860,057	-		RR42_RS17840	0.77	-1.1