Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17535

Experiment: R2A with Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS17530 and RR42_RS17535 are separated by 116 nucleotidesRR42_RS17535 and RR42_RS17540 are separated by 64 nucleotidesRR42_RS17540 and RR42_RS17545 are separated by 64 nucleotides RR42_RS17530: RR42_RS17530 - gamma-glutamyl phosphate reductase, at 3,792,986 to 3,794,266 _RS17530 RR42_RS17535: RR42_RS17535 - DNA polymerase III subunit delta, at 3,794,383 to 3,795,423 _RS17535 RR42_RS17540: RR42_RS17540 - lipoprotein, at 3,795,488 to 3,795,994 _RS17540 RR42_RS17545: RR42_RS17545 - leucyl-tRNA synthetase, at 3,796,059 to 3,798,695 _RS17545 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -1 0 1 2at 3793.413 kb on + strand, within RR42_RS17530at 3793.414 kb on - strand, within RR42_RS17530at 3793.560 kb on + strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.561 kb on - strand, within RR42_RS17530at 3793.666 kb on - strand, within RR42_RS17530at 3794.242 kb on - strandat 3794.242 kb on - strandat 3794.242 kb on - strandat 3794.242 kb on - strandat 3794.325 kb on - strandat 3794.325 kb on - strandat 3796.044 kb on - strandat 3796.048 kb on - strandat 3796.048 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
remove
3,793,413 + RR42_RS17530 0.33 +0.6
3,793,414 - RR42_RS17530 0.33 -0.7
3,793,560 + RR42_RS17530 0.45 -0.5
3,793,561 - RR42_RS17530 0.45 +0.5
3,793,561 - RR42_RS17530 0.45 -0.2
3,793,561 - RR42_RS17530 0.45 -1.5
3,793,561 - RR42_RS17530 0.45 +1.3
3,793,561 - RR42_RS17530 0.45 +0.7
3,793,561 - RR42_RS17530 0.45 +0.9
3,793,666 - RR42_RS17530 0.53 -0.2
3,794,242 - +2.1
3,794,242 - +0.8
3,794,242 - +0.3
3,794,242 - -1.0
3,794,325 - -0.9
3,794,325 - +0.9
3,796,044 - -1.5
3,796,048 - +0.5
3,796,048 - -1.1

Or see this region's nucleotide sequence