Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17090

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17085 and RR42_RS17090 are separated by 100 nucleotidesRR42_RS17090 and RR42_RS17095 are separated by 39 nucleotidesRR42_RS17095 and RR42_RS17100 are separated by 14 nucleotides RR42_RS17085: RR42_RS17085 - luciferase, at 3,702,246 to 3,703,268 _RS17085 RR42_RS17090: RR42_RS17090 - aminotransferase, at 3,703,369 to 3,703,869 _RS17090 RR42_RS17095: RR42_RS17095 - bleomycin resistance protein, at 3,703,909 to 3,704,751 _RS17095 RR42_RS17100: RR42_RS17100 - membrane protein, at 3,704,766 to 3,705,779 _RS17100 Position (kb) 3703 3704Strain fitness (log2 ratio) -1 0 1 2at 3702.373 kb on - strand, within RR42_RS17085at 3702.504 kb on + strand, within RR42_RS17085at 3702.505 kb on - strand, within RR42_RS17085at 3702.507 kb on + strand, within RR42_RS17085at 3702.507 kb on + strand, within RR42_RS17085at 3702.507 kb on + strand, within RR42_RS17085at 3702.507 kb on + strand, within RR42_RS17085at 3702.508 kb on - strand, within RR42_RS17085at 3702.508 kb on - strand, within RR42_RS17085at 3702.508 kb on - strand, within RR42_RS17085at 3702.508 kb on - strand, within RR42_RS17085at 3702.508 kb on - strand, within RR42_RS17085at 3702.636 kb on + strand, within RR42_RS17085at 3702.637 kb on - strand, within RR42_RS17085at 3702.840 kb on - strand, within RR42_RS17085at 3702.901 kb on - strand, within RR42_RS17085at 3702.901 kb on - strand, within RR42_RS17085at 3702.916 kb on - strand, within RR42_RS17085at 3702.916 kb on - strand, within RR42_RS17085at 3702.917 kb on + strand, within RR42_RS17085at 3702.918 kb on - strand, within RR42_RS17085at 3702.918 kb on - strand, within RR42_RS17085at 3702.918 kb on - strand, within RR42_RS17085at 3702.918 kb on - strand, within RR42_RS17085at 3703.011 kb on + strand, within RR42_RS17085at 3703.012 kb on - strand, within RR42_RS17085at 3703.227 kb on + strandat 3703.228 kb on - strandat 3703.309 kb on - strandat 3703.345 kb on + strandat 3703.867 kb on + strandat 3703.867 kb on + strandat 3703.868 kb on - strandat 3703.868 kb on - strandat 3703.868 kb on - strandat 3703.903 kb on - strandat 3704.211 kb on - strand, within RR42_RS17095at 3704.262 kb on + strand, within RR42_RS17095at 3704.262 kb on + strand, within RR42_RS17095at 3704.262 kb on + strand, within RR42_RS17095at 3704.262 kb on + strand, within RR42_RS17095at 3704.262 kb on + strand, within RR42_RS17095at 3704.263 kb on - strand, within RR42_RS17095at 3704.292 kb on + strand, within RR42_RS17095at 3704.493 kb on + strand, within RR42_RS17095at 3704.494 kb on - strand, within RR42_RS17095at 3704.552 kb on + strand, within RR42_RS17095at 3704.555 kb on + strand, within RR42_RS17095at 3704.555 kb on + strand, within RR42_RS17095at 3704.601 kb on - strand, within RR42_RS17095at 3704.734 kb on + strandat 3704.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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3,702,373 - RR42_RS17085 0.12 +1.1
3,702,504 + RR42_RS17085 0.25 -0.3
3,702,505 - RR42_RS17085 0.25 -1.7
3,702,507 + RR42_RS17085 0.26 +0.6
3,702,507 + RR42_RS17085 0.26 -0.4
3,702,507 + RR42_RS17085 0.26 +0.8
3,702,507 + RR42_RS17085 0.26 +0.9
3,702,508 - RR42_RS17085 0.26 +0.3
3,702,508 - RR42_RS17085 0.26 -0.4
3,702,508 - RR42_RS17085 0.26 +0.2
3,702,508 - RR42_RS17085 0.26 -0.1
3,702,508 - RR42_RS17085 0.26 -0.6
3,702,636 + RR42_RS17085 0.38 -0.6
3,702,637 - RR42_RS17085 0.38 +0.3
3,702,840 - RR42_RS17085 0.58 +0.6
3,702,901 - RR42_RS17085 0.64 -0.2
3,702,901 - RR42_RS17085 0.64 +2.3
3,702,916 - RR42_RS17085 0.65 -0.6
3,702,916 - RR42_RS17085 0.65 -0.1
3,702,917 + RR42_RS17085 0.66 -0.3
3,702,918 - RR42_RS17085 0.66 +0.4
3,702,918 - RR42_RS17085 0.66 +1.1
3,702,918 - RR42_RS17085 0.66 +0.7
3,702,918 - RR42_RS17085 0.66 +0.5
3,703,011 + RR42_RS17085 0.75 +0.7
3,703,012 - RR42_RS17085 0.75 +0.6
3,703,227 + -0.5
3,703,228 - +0.9
3,703,309 - -0.8
3,703,345 + +0.3
3,703,867 + +2.3
3,703,867 + -0.7
3,703,868 - +1.1
3,703,868 - +0.8
3,703,868 - -1.0
3,703,903 - -0.4
3,704,211 - RR42_RS17095 0.36 -0.8
3,704,262 + RR42_RS17095 0.42 -0.0
3,704,262 + RR42_RS17095 0.42 -1.5
3,704,262 + RR42_RS17095 0.42 +0.9
3,704,262 + RR42_RS17095 0.42 -0.1
3,704,262 + RR42_RS17095 0.42 -0.1
3,704,263 - RR42_RS17095 0.42 +0.9
3,704,292 + RR42_RS17095 0.45 -0.4
3,704,493 + RR42_RS17095 0.69 -0.2
3,704,494 - RR42_RS17095 0.69 +0.5
3,704,552 + RR42_RS17095 0.76 +1.8
3,704,555 + RR42_RS17095 0.77 -0.6
3,704,555 + RR42_RS17095 0.77 +0.2
3,704,601 - RR42_RS17095 0.82 -0.1
3,704,734 + -0.7
3,704,734 + -1.3

Or see this region's nucleotide sequence