Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15430 and RR42_RS15435 are separated by 88 nucleotides RR42_RS15435 and RR42_RS15440 are separated by 71 nucleotides
RR42_RS15430: RR42_RS15430 - peptidase, at 3,334,565 to 3,336,460
_RS15430
RR42_RS15435: RR42_RS15435 - tRNA-Lys, at 3,336,549 to 3,336,624
_RS15435
RR42_RS15440: RR42_RS15440 - transporter, at 3,336,696 to 3,337,811
_RS15440
Position (kb)
3336
3337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3335.803 kb on - strand, within RR42_RS15430 at 3335.803 kb on - strand, within RR42_RS15430 at 3335.803 kb on - strand, within RR42_RS15430 at 3335.803 kb on - strand, within RR42_RS15430 at 3336.008 kb on + strand, within RR42_RS15430 at 3336.020 kb on + strand, within RR42_RS15430 at 3336.086 kb on + strand, within RR42_RS15430 at 3336.350 kb on + strand at 3336.351 kb on - strand at 3336.411 kb on - strand at 3336.517 kb on + strand at 3336.518 kb on - strand at 3336.518 kb on - strand at 3336.518 kb on - strand at 3336.689 kb on - strand at 3336.698 kb on - strand at 3336.799 kb on - strand at 3336.940 kb on + strand, within RR42_RS15440 at 3337.036 kb on + strand, within RR42_RS15440 at 3337.037 kb on - strand, within RR42_RS15440 at 3337.037 kb on - strand, within RR42_RS15440 at 3337.037 kb on - strand, within RR42_RS15440 at 3337.037 kb on - strand, within RR42_RS15440 at 3337.043 kb on - strand, within RR42_RS15440 at 3337.150 kb on + strand, within RR42_RS15440 at 3337.150 kb on + strand, within RR42_RS15440 at 3337.151 kb on - strand, within RR42_RS15440 at 3337.151 kb on - strand, within RR42_RS15440 at 3337.407 kb on - strand, within RR42_RS15440 at 3337.409 kb on - strand, within RR42_RS15440 at 3337.409 kb on - strand, within RR42_RS15440 at 3337.466 kb on + strand, within RR42_RS15440 at 3337.467 kb on - strand, within RR42_RS15440 at 3337.570 kb on + strand, within RR42_RS15440 at 3337.570 kb on + strand, within RR42_RS15440 at 3337.570 kb on + strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.571 kb on - strand, within RR42_RS15440 at 3337.595 kb on - strand, within RR42_RS15440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,335,803 - RR42_RS15430 0.65 -1.1 3,335,803 - RR42_RS15430 0.65 -0.5 3,335,803 - RR42_RS15430 0.65 -0.8 3,335,803 - RR42_RS15430 0.65 +0.3 3,336,008 + RR42_RS15430 0.76 -0.4 3,336,020 + RR42_RS15430 0.77 -2.3 3,336,086 + RR42_RS15430 0.80 -0.5 3,336,350 + -1.9 3,336,351 - -0.1 3,336,411 - +0.1 3,336,517 + -0.8 3,336,518 - +0.5 3,336,518 - +0.1 3,336,518 - +0.4 3,336,689 - +0.3 3,336,698 - -0.4 3,336,799 - +0.4 3,336,940 + RR42_RS15440 0.22 -0.9 3,337,036 + RR42_RS15440 0.30 +0.1 3,337,037 - RR42_RS15440 0.31 -0.5 3,337,037 - RR42_RS15440 0.31 +0.5 3,337,037 - RR42_RS15440 0.31 -2.7 3,337,037 - RR42_RS15440 0.31 +0.4 3,337,043 - RR42_RS15440 0.31 +2.1 3,337,150 + RR42_RS15440 0.41 +0.8 3,337,150 + RR42_RS15440 0.41 -0.7 3,337,151 - RR42_RS15440 0.41 +0.9 3,337,151 - RR42_RS15440 0.41 -0.7 3,337,407 - RR42_RS15440 0.64 +0.2 3,337,409 - RR42_RS15440 0.64 +0.6 3,337,409 - RR42_RS15440 0.64 +0.5 3,337,466 + RR42_RS15440 0.69 +2.1 3,337,467 - RR42_RS15440 0.69 +0.3 3,337,570 + RR42_RS15440 0.78 +2.1 3,337,570 + RR42_RS15440 0.78 -1.3 3,337,570 + RR42_RS15440 0.78 +1.0 3,337,571 - RR42_RS15440 0.78 +0.5 3,337,571 - RR42_RS15440 0.78 -1.3 3,337,571 - RR42_RS15440 0.78 -1.6 3,337,571 - RR42_RS15440 0.78 -1.7 3,337,571 - RR42_RS15440 0.78 +0.1 3,337,571 - RR42_RS15440 0.78 +0.1 3,337,595 - RR42_RS15440 0.81 -1.3
Or see this region's nucleotide sequence