Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14765

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14755 and RR42_RS14760 are separated by 110 nucleotidesRR42_RS14760 and RR42_RS14765 are separated by 19 nucleotidesRR42_RS14765 and RR42_RS14770 are separated by 67 nucleotidesRR42_RS14770 and RR42_RS14775 are separated by 195 nucleotides RR42_RS14755: RR42_RS14755 - hypothetical protein, at 3,180,382 to 3,181,008 _RS14755 RR42_RS14760: RR42_RS14760 - molybdenum cofactor biosynthesis protein MogA, at 3,181,119 to 3,181,709 _RS14760 RR42_RS14765: RR42_RS14765 - transporter, at 3,181,729 to 3,182,610 _RS14765 RR42_RS14770: RR42_RS14770 - oligoribonuclease, at 3,182,678 to 3,183,328 _RS14770 RR42_RS14775: RR42_RS14775 - peptidase M48, at 3,183,524 to 3,184,771 _RS14775 Position (kb) 3181 3182 3183Strain fitness (log2 ratio) -2 -1 0 1at 3180.934 kb on - strand, within RR42_RS14755at 3181.123 kb on + strandat 3181.124 kb on - strandat 3181.164 kb on + strandat 3181.165 kb on - strandat 3181.165 kb on - strandat 3181.165 kb on - strandat 3181.214 kb on + strand, within RR42_RS14760at 3181.215 kb on - strand, within RR42_RS14760at 3181.609 kb on - strand, within RR42_RS14760at 3181.609 kb on - strand, within RR42_RS14760at 3181.635 kb on + strand, within RR42_RS14760at 3181.635 kb on + strand, within RR42_RS14760at 3181.745 kb on + strandat 3181.746 kb on - strandat 3181.746 kb on - strandat 3181.746 kb on - strandat 3182.547 kb on - strandat 3182.625 kb on + strandat 3183.413 kb on - strandat 3183.413 kb on - strandat 3183.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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3,180,934 - RR42_RS14755 0.88 -0.4
3,181,123 + +1.1
3,181,124 - -0.1
3,181,164 + +0.3
3,181,165 - -0.5
3,181,165 - +0.1
3,181,165 - -2.6
3,181,214 + RR42_RS14760 0.16 -1.3
3,181,215 - RR42_RS14760 0.16 -0.9
3,181,609 - RR42_RS14760 0.83 -0.4
3,181,609 - RR42_RS14760 0.83 +1.1
3,181,635 + RR42_RS14760 0.87 +0.0
3,181,635 + RR42_RS14760 0.87 +1.1
3,181,745 + +0.3
3,181,746 - +1.0
3,181,746 - +0.8
3,181,746 - -0.3
3,182,547 - +0.2
3,182,625 + -1.1
3,183,413 - -0.6
3,183,413 - +0.2
3,183,413 - -2.2

Or see this region's nucleotide sequence