Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14650 and RR42_RS14655 are separated by 875 nucleotides RR42_RS14655 and RR42_RS14660 are separated by 89 nucleotides RR42_RS14660 and RR42_RS14665 are separated by 103 nucleotides
RR42_RS14650: RR42_RS14650 - multidrug ABC transporter ATP-binding protein, at 3,152,896 to 3,154,728
_RS14650
RR42_RS14655: RR42_RS14655 - chromate transporter, at 3,155,604 to 3,156,134
_RS14655
RR42_RS14660: RR42_RS14660 - chromate transporter, at 3,156,224 to 3,156,802
_RS14660
RR42_RS14665: RR42_RS14665 - DNA topoisomerase IV subunit A, at 3,156,906 to 3,159,257
_RS14665
Position (kb)
3155
3156
3157 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3154.679 kb on - strand at 3154.679 kb on - strand at 3154.787 kb on + strand at 3154.827 kb on + strand at 3154.827 kb on + strand at 3154.848 kb on - strand at 3155.205 kb on + strand at 3155.515 kb on + strand at 3155.515 kb on + strand at 3155.515 kb on + strand at 3155.522 kb on + strand at 3155.522 kb on + strand at 3155.522 kb on + strand at 3155.523 kb on - strand at 3155.566 kb on + strand at 3155.566 kb on + strand at 3155.839 kb on + strand, within RR42_RS14655 at 3155.840 kb on - strand, within RR42_RS14655 at 3155.840 kb on - strand, within RR42_RS14655 at 3155.980 kb on + strand, within RR42_RS14655 at 3155.980 kb on + strand, within RR42_RS14655 at 3155.980 kb on + strand, within RR42_RS14655 at 3155.980 kb on + strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3155.981 kb on - strand, within RR42_RS14655 at 3156.153 kb on - strand at 3156.222 kb on - strand at 3156.222 kb on - strand at 3156.454 kb on - strand, within RR42_RS14660 at 3156.462 kb on + strand, within RR42_RS14660 at 3156.463 kb on - strand, within RR42_RS14660 at 3156.756 kb on - strand at 3156.794 kb on - strand at 3156.809 kb on + strand at 3156.907 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,154,679 - -0.1 3,154,679 - -0.2 3,154,787 + -0.1 3,154,827 + -0.2 3,154,827 + -1.2 3,154,848 - -0.2 3,155,205 + -0.3 3,155,515 + -0.2 3,155,515 + -0.0 3,155,515 + +0.6 3,155,522 + +1.6 3,155,522 + +0.5 3,155,522 + +0.1 3,155,523 - -0.3 3,155,566 + -0.2 3,155,566 + +1.1 3,155,839 + RR42_RS14655 0.44 +2.1 3,155,840 - RR42_RS14655 0.44 -0.5 3,155,840 - RR42_RS14655 0.44 -0.3 3,155,980 + RR42_RS14655 0.71 +2.9 3,155,980 + RR42_RS14655 0.71 +0.5 3,155,980 + RR42_RS14655 0.71 -1.1 3,155,980 + RR42_RS14655 0.71 +1.0 3,155,981 - RR42_RS14655 0.71 +0.2 3,155,981 - RR42_RS14655 0.71 -0.4 3,155,981 - RR42_RS14655 0.71 +0.3 3,155,981 - RR42_RS14655 0.71 +0.1 3,155,981 - RR42_RS14655 0.71 +0.4 3,155,981 - RR42_RS14655 0.71 +0.5 3,155,981 - RR42_RS14655 0.71 -0.5 3,156,153 - -2.8 3,156,222 - -0.4 3,156,222 - +0.2 3,156,454 - RR42_RS14660 0.40 -0.4 3,156,462 + RR42_RS14660 0.41 -0.4 3,156,463 - RR42_RS14660 0.41 +0.1 3,156,756 - -0.9 3,156,794 - -0.8 3,156,809 + +0.1 3,156,907 + -0.2
Or see this region's nucleotide sequence