Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11145

Experiment: R2A with Cisplatin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cisplatin 0.001 mg/ml
2,379,155	+		RR42_RS11140	0.29	-0.0
2,379,482	+		RR42_RS11140	0.54	-2.3
2,379,482	+		RR42_RS11140	0.54	+0.4
2,379,482	+		RR42_RS11140	0.54	-1.2
2,379,482	+		RR42_RS11140	0.54	-0.9
2,379,483	-		RR42_RS11140	0.54	-0.0
2,379,483	-		RR42_RS11140	0.54	-0.1
2,379,483	-		RR42_RS11140	0.54	-0.7
2,379,524	+		RR42_RS11140	0.57	+0.5
2,379,527	+		RR42_RS11140	0.57	+1.0
2,379,528	-		RR42_RS11140	0.57	-0.0
2,379,594	+		RR42_RS11140	0.62	-0.3
2,379,708	-		RR42_RS11140	0.71	+0.4
2,379,799	-		RR42_RS11140	0.78	-0.0
2,379,799	-		RR42_RS11140	0.78	+1.2
2,379,890	+		RR42_RS11140	0.85	-0.3
2,379,890	+		RR42_RS11140	0.85	+0.8
2,379,906	+		RR42_RS11140	0.86	-0.0
2,379,907	-		RR42_RS11140	0.86	+0.8
2,380,098	+				+0.9
2,380,098	+				+0.6
2,380,099	-				+1.4
2,380,206	-		RR42_RS11145	0.11	-2.4
2,380,338	-		RR42_RS11145	0.25	+0.9
2,380,415	-		RR42_RS11145	0.33	-0.4
2,380,415	-		RR42_RS11145	0.33	-0.5
2,380,415	-		RR42_RS11145	0.33	+0.3
2,380,499	-		RR42_RS11145	0.42	-0.2
2,380,582	-		RR42_RS11145	0.51	-2.3
2,380,582	-		RR42_RS11145	0.51	+0.3
2,380,653	-		RR42_RS11145	0.58	-0.9
2,380,716	-		RR42_RS11145	0.65	+0.4
2,380,743	+		RR42_RS11145	0.68	-0.6
2,380,759	+		RR42_RS11145	0.70	+2.8
2,380,760	-		RR42_RS11145	0.70	-2.1
2,380,785	+		RR42_RS11145	0.72	+0.0
2,380,785	+		RR42_RS11145	0.72	-0.6
2,380,785	+		RR42_RS11145	0.72	+0.0
2,380,785	+		RR42_RS11145	0.72	-0.1
2,380,918	+		RR42_RS11145	0.86	+0.6
2,380,918	+		RR42_RS11145	0.86	-0.8
2,380,918	+		RR42_RS11145	0.86	-0.1
2,380,919	-				+1.9
2,380,920	+		RR42_RS11145	0.86	-2.0
2,380,920	+		RR42_RS11145	0.86	-0.6
2,380,920	+		RR42_RS11145	0.86	+0.9
2,380,920	+		RR42_RS11145	0.86	-0.1
2,380,921	-		RR42_RS11145	0.87	-1.8
2,380,921	-		RR42_RS11145	0.87	-0.1
2,381,008	-				-0.4
2,381,052	+				-0.4
2,381,052	+				-0.7
2,381,053	-				-1.3
2,381,174	-				-1.6
2,381,174	-				-0.3
2,381,174	-				+0.6
2,381,274	+				-1.3
2,381,523	+		RR42_RS11150	0.24	-0.0
2,381,524	-		RR42_RS11150	0.24	-0.7
2,381,524	-		RR42_RS11150	0.24	+2.9
2,381,524	-		RR42_RS11150	0.24	-0.5
2,381,524	-		RR42_RS11150	0.24	-1.7
2,381,578	+		RR42_RS11150	0.28	-0.2
2,381,613	+		RR42_RS11150	0.31	+0.3
2,381,613	+		RR42_RS11150	0.31	-1.1
2,381,613	+		RR42_RS11150	0.31	-0.4
2,381,614	-		RR42_RS11150	0.31	-0.3
2,381,617	-		RR42_RS11150	0.31	-0.1
2,381,625	+		RR42_RS11150	0.32	-0.2
2,381,625	+		RR42_RS11150	0.32	-0.6
2,381,625	+		RR42_RS11150	0.32	+0.1
2,381,625	+		RR42_RS11150	0.32	+0.6
2,381,626	-		RR42_RS11150	0.32	+0.6
2,381,626	-		RR42_RS11150	0.32	-0.7
2,381,626	-		RR42_RS11150	0.32	+0.3
2,381,626	-		RR42_RS11150	0.32	-0.9
2,381,685	+		RR42_RS11150	0.37	-0.9
2,381,688	+		RR42_RS11150	0.37	-0.6
2,381,688	+		RR42_RS11150	0.37	-1.5
2,381,688	+		RR42_RS11150	0.37	-0.5
2,381,689	-		RR42_RS11150	0.37	-0.6
2,381,689	-		RR42_RS11150	0.37	+0.7
2,381,695	-		RR42_RS11150	0.38	-0.6
2,381,695	-		RR42_RS11150	0.38	+0.3
2,381,695	-		RR42_RS11150	0.38	+0.8
2,381,697	+		RR42_RS11150	0.38	+0.5
2,381,698	-		RR42_RS11150	0.38	+0.6
2,381,698	-		RR42_RS11150	0.38	+0.3
2,381,698	-		RR42_RS11150	0.38	-1.1
2,381,698	-		RR42_RS11150	0.38	-0.3
2,381,929	-		RR42_RS11150	0.57	+1.5
2,381,946	+		RR42_RS11150	0.58	+0.3
2,381,979	+		RR42_RS11150	0.61	-0.2
2,381,980	-		RR42_RS11150	0.61	-0.1
2,381,980	-		RR42_RS11150	0.61	-0.1