Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10910

Experiment: R2A with Cisplatin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS10900 and RR42_RS10905 are separated by 123 nucleotidesRR42_RS10905 and RR42_RS10910 are separated by 8 nucleotidesRR42_RS10910 and RR42_RS10915 are separated by 188 nucleotides RR42_RS10900: RR42_RS10900 - DNA polymerase III subunit delta', at 2,331,541 to 2,332,548 _RS10900 RR42_RS10905: RR42_RS10905 - thymidylate kinase, at 2,332,672 to 2,333,286 _RS10905 RR42_RS10910: RR42_RS10910 - aminodeoxychorismate lyase, at 2,333,295 to 2,334,290 _RS10910 RR42_RS10915: RR42_RS10915 - folate-binding protein, at 2,334,479 to 2,335,474 _RS10915 Position (kb) 2333 2334 2335Strain fitness (log2 ratio) -1 0 1 2at 2332.542 kb on - strandat 2332.564 kb on - strandat 2332.564 kb on - strandat 2332.582 kb on - strandat 2332.586 kb on - strandat 2332.586 kb on - strandat 2332.586 kb on - strandat 2332.586 kb on - strandat 2332.635 kb on - strandat 2333.297 kb on - strandat 2333.297 kb on - strandat 2333.387 kb on - strandat 2333.484 kb on - strand, within RR42_RS10910at 2333.484 kb on - strand, within RR42_RS10910at 2333.484 kb on - strand, within RR42_RS10910at 2333.484 kb on - strand, within RR42_RS10910at 2333.484 kb on - strand, within RR42_RS10910at 2333.488 kb on + strand, within RR42_RS10910at 2333.488 kb on + strand, within RR42_RS10910at 2333.488 kb on + strand, within RR42_RS10910at 2333.489 kb on - strand, within RR42_RS10910at 2333.489 kb on - strand, within RR42_RS10910at 2333.489 kb on - strand, within RR42_RS10910at 2333.489 kb on - strand, within RR42_RS10910at 2333.552 kb on - strand, within RR42_RS10910at 2333.684 kb on - strand, within RR42_RS10910at 2333.696 kb on - strand, within RR42_RS10910at 2333.768 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2333.969 kb on - strand, within RR42_RS10910at 2334.072 kb on - strand, within RR42_RS10910at 2334.387 kb on - strandat 2334.387 kb on - strandat 2334.387 kb on - strandat 2334.387 kb on - strandat 2334.391 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
remove
2,332,542 - -0.7
2,332,564 - +1.9
2,332,564 - -0.4
2,332,582 - -0.3
2,332,586 - +1.7
2,332,586 - +0.7
2,332,586 - -0.8
2,332,586 - -0.7
2,332,635 - -0.6
2,333,297 - +0.6
2,333,297 - -1.0
2,333,387 - -0.7
2,333,484 - RR42_RS10910 0.19 +0.1
2,333,484 - RR42_RS10910 0.19 -0.5
2,333,484 - RR42_RS10910 0.19 +0.2
2,333,484 - RR42_RS10910 0.19 -0.2
2,333,484 - RR42_RS10910 0.19 -1.7
2,333,488 + RR42_RS10910 0.19 +0.2
2,333,488 + RR42_RS10910 0.19 +0.3
2,333,488 + RR42_RS10910 0.19 -0.7
2,333,489 - RR42_RS10910 0.19 -1.3
2,333,489 - RR42_RS10910 0.19 -1.6
2,333,489 - RR42_RS10910 0.19 +0.1
2,333,489 - RR42_RS10910 0.19 -0.5
2,333,552 - RR42_RS10910 0.26 -0.9
2,333,684 - RR42_RS10910 0.39 +0.6
2,333,696 - RR42_RS10910 0.40 +0.5
2,333,768 - RR42_RS10910 0.47 -0.7
2,333,969 - RR42_RS10910 0.68 -0.5
2,333,969 - RR42_RS10910 0.68 -1.7
2,333,969 - RR42_RS10910 0.68 -0.4
2,333,969 - RR42_RS10910 0.68 -0.1
2,333,969 - RR42_RS10910 0.68 -0.3
2,333,969 - RR42_RS10910 0.68 +0.1
2,333,969 - RR42_RS10910 0.68 -1.1
2,334,072 - RR42_RS10910 0.78 -0.8
2,334,387 - -0.1
2,334,387 - +0.9
2,334,387 - +0.5
2,334,387 - -1.1
2,334,391 + +0.5

Or see this region's nucleotide sequence