Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09960 and RR42_RS09965 are separated by 158 nucleotides RR42_RS09965 and RR42_RS09970 are separated by 276 nucleotides
RR42_RS09960: RR42_RS09960 - NmrA family transcriptional regulator, at 2,124,930 to 2,125,682
_RS09960
RR42_RS09965: RR42_RS09965 - DNA-binding protein, at 2,125,841 to 2,127,373
_RS09965
RR42_RS09970: RR42_RS09970 - hypothetical protein, at 2,127,650 to 2,129,050
_RS09970
Position (kb)
2125
2126
2127
2128 Strain fitness (log2 ratio)
-1
0
1
2 at 2124.941 kb on + strand at 2124.941 kb on + strand at 2125.031 kb on - strand, within RR42_RS09960 at 2125.033 kb on + strand, within RR42_RS09960 at 2125.034 kb on - strand, within RR42_RS09960 at 2125.143 kb on - strand, within RR42_RS09960 at 2125.363 kb on + strand, within RR42_RS09960 at 2125.443 kb on - strand, within RR42_RS09960 at 2125.668 kb on + strand at 2125.751 kb on + strand at 2125.801 kb on + strand at 2125.901 kb on + strand at 2125.902 kb on - strand at 2125.902 kb on - strand at 2126.088 kb on + strand, within RR42_RS09965 at 2126.316 kb on + strand, within RR42_RS09965 at 2126.391 kb on - strand, within RR42_RS09965 at 2126.421 kb on - strand, within RR42_RS09965 at 2126.421 kb on - strand, within RR42_RS09965 at 2126.442 kb on + strand, within RR42_RS09965 at 2126.556 kb on - strand, within RR42_RS09965 at 2126.787 kb on - strand, within RR42_RS09965 at 2126.787 kb on - strand, within RR42_RS09965 at 2126.805 kb on - strand, within RR42_RS09965 at 2127.059 kb on + strand, within RR42_RS09965 at 2127.093 kb on + strand, within RR42_RS09965 at 2127.255 kb on - strand at 2127.515 kb on + strand at 2127.516 kb on - strand at 2127.651 kb on + strand at 2127.726 kb on + strand at 2127.726 kb on + strand at 2127.727 kb on - strand at 2127.889 kb on + strand, within RR42_RS09970 at 2127.889 kb on + strand, within RR42_RS09970 at 2127.889 kb on + strand, within RR42_RS09970 at 2127.890 kb on - strand, within RR42_RS09970 at 2127.905 kb on - strand, within RR42_RS09970 at 2127.971 kb on + strand, within RR42_RS09970 at 2127.971 kb on + strand, within RR42_RS09970 at 2127.971 kb on + strand, within RR42_RS09970 at 2127.999 kb on + strand, within RR42_RS09970 at 2128.000 kb on - strand, within RR42_RS09970 at 2128.000 kb on - strand, within RR42_RS09970 at 2128.110 kb on + strand, within RR42_RS09970 at 2128.221 kb on - strand, within RR42_RS09970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 2,124,941 + -0.0 2,124,941 + -0.5 2,125,031 - RR42_RS09960 0.13 +0.6 2,125,033 + RR42_RS09960 0.14 +0.8 2,125,034 - RR42_RS09960 0.14 -0.4 2,125,143 - RR42_RS09960 0.28 -0.6 2,125,363 + RR42_RS09960 0.58 -1.0 2,125,443 - RR42_RS09960 0.68 -0.9 2,125,668 + -0.5 2,125,751 + -0.9 2,125,801 + +0.0 2,125,901 + -0.1 2,125,902 - +0.3 2,125,902 - -0.4 2,126,088 + RR42_RS09965 0.16 +0.6 2,126,316 + RR42_RS09965 0.31 +0.0 2,126,391 - RR42_RS09965 0.36 -0.6 2,126,421 - RR42_RS09965 0.38 +0.5 2,126,421 - RR42_RS09965 0.38 -0.4 2,126,442 + RR42_RS09965 0.39 +2.4 2,126,556 - RR42_RS09965 0.47 -1.0 2,126,787 - RR42_RS09965 0.62 -1.4 2,126,787 - RR42_RS09965 0.62 +1.2 2,126,805 - RR42_RS09965 0.63 -0.2 2,127,059 + RR42_RS09965 0.79 +0.4 2,127,093 + RR42_RS09965 0.82 -0.3 2,127,255 - -0.4 2,127,515 + +0.3 2,127,516 - -0.6 2,127,651 + +1.6 2,127,726 + +0.1 2,127,726 + +0.8 2,127,727 - +0.3 2,127,889 + RR42_RS09970 0.17 +0.5 2,127,889 + RR42_RS09970 0.17 +0.1 2,127,889 + RR42_RS09970 0.17 +0.5 2,127,890 - RR42_RS09970 0.17 -1.4 2,127,905 - RR42_RS09970 0.18 -1.1 2,127,971 + RR42_RS09970 0.23 +1.6 2,127,971 + RR42_RS09970 0.23 +1.3 2,127,971 + RR42_RS09970 0.23 +1.3 2,127,999 + RR42_RS09970 0.25 -0.1 2,128,000 - RR42_RS09970 0.25 -0.0 2,128,000 - RR42_RS09970 0.25 -0.2 2,128,110 + RR42_RS09970 0.33 +1.3 2,128,221 - RR42_RS09970 0.41 -0.4
Or see this region's nucleotide sequence