Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09230

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09225 and RR42_RS09230 are separated by 110 nucleotidesRR42_RS09230 and RR42_RS09235 are separated by 111 nucleotides RR42_RS09225: RR42_RS09225 - DSBA oxidoreductase, at 1,949,544 to 1,951,109 _RS09225 RR42_RS09230: RR42_RS09230 - hemolysin D, at 1,951,220 to 1,952,491 _RS09230 RR42_RS09235: RR42_RS09235 - MarR family transcriptional regulator, at 1,952,603 to 1,954,048 _RS09235 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -2 -1 0 1at 1950.244 kb on + strand, within RR42_RS09225at 1950.351 kb on - strand, within RR42_RS09225at 1950.520 kb on + strand, within RR42_RS09225at 1950.571 kb on + strand, within RR42_RS09225at 1950.571 kb on + strand, within RR42_RS09225at 1950.572 kb on - strand, within RR42_RS09225at 1950.572 kb on - strand, within RR42_RS09225at 1950.695 kb on - strand, within RR42_RS09225at 1950.695 kb on - strand, within RR42_RS09225at 1951.044 kb on + strandat 1951.045 kb on - strandat 1951.222 kb on - strandat 1951.366 kb on - strand, within RR42_RS09230at 1951.389 kb on + strand, within RR42_RS09230at 1951.389 kb on + strand, within RR42_RS09230at 1951.389 kb on + strand, within RR42_RS09230at 1951.389 kb on + strand, within RR42_RS09230at 1951.390 kb on - strand, within RR42_RS09230at 1951.641 kb on + strand, within RR42_RS09230at 1951.642 kb on - strand, within RR42_RS09230at 1951.679 kb on + strand, within RR42_RS09230at 1951.680 kb on - strand, within RR42_RS09230at 1951.803 kb on + strand, within RR42_RS09230at 1951.804 kb on - strand, within RR42_RS09230at 1951.804 kb on - strand, within RR42_RS09230at 1952.104 kb on - strand, within RR42_RS09230at 1952.104 kb on - strand, within RR42_RS09230at 1952.121 kb on + strand, within RR42_RS09230at 1952.122 kb on - strand, within RR42_RS09230at 1952.122 kb on - strand, within RR42_RS09230at 1952.310 kb on + strand, within RR42_RS09230at 1952.311 kb on - strand, within RR42_RS09230at 1952.344 kb on - strand, within RR42_RS09230at 1952.352 kb on + strand, within RR42_RS09230at 1952.352 kb on + strand, within RR42_RS09230at 1952.353 kb on - strand, within RR42_RS09230at 1952.356 kb on - strand, within RR42_RS09230at 1952.608 kb on + strandat 1952.609 kb on - strandat 1952.609 kb on - strandat 1952.892 kb on + strand, within RR42_RS09235at 1952.893 kb on - strand, within RR42_RS09235at 1952.893 kb on - strand, within RR42_RS09235at 1952.893 kb on - strand, within RR42_RS09235at 1952.893 kb on - strand, within RR42_RS09235at 1952.934 kb on - strand, within RR42_RS09235at 1953.075 kb on + strand, within RR42_RS09235at 1953.475 kb on - strand, within RR42_RS09235

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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1,950,244 + RR42_RS09225 0.45 +1.3
1,950,351 - RR42_RS09225 0.52 -0.0
1,950,520 + RR42_RS09225 0.62 -0.7
1,950,571 + RR42_RS09225 0.66 +0.3
1,950,571 + RR42_RS09225 0.66 -0.3
1,950,572 - RR42_RS09225 0.66 -0.3
1,950,572 - RR42_RS09225 0.66 -0.2
1,950,695 - RR42_RS09225 0.73 -0.3
1,950,695 - RR42_RS09225 0.73 -0.9
1,951,044 + -0.1
1,951,045 - -1.5
1,951,222 - -0.7
1,951,366 - RR42_RS09230 0.11 -0.0
1,951,389 + RR42_RS09230 0.13 +0.5
1,951,389 + RR42_RS09230 0.13 -1.4
1,951,389 + RR42_RS09230 0.13 +0.3
1,951,389 + RR42_RS09230 0.13 -0.3
1,951,390 - RR42_RS09230 0.13 -0.9
1,951,641 + RR42_RS09230 0.33 +0.1
1,951,642 - RR42_RS09230 0.33 +0.9
1,951,679 + RR42_RS09230 0.36 -1.6
1,951,680 - RR42_RS09230 0.36 +0.5
1,951,803 + RR42_RS09230 0.46 +0.6
1,951,804 - RR42_RS09230 0.46 -0.6
1,951,804 - RR42_RS09230 0.46 +1.0
1,952,104 - RR42_RS09230 0.69 -1.4
1,952,104 - RR42_RS09230 0.69 -2.0
1,952,121 + RR42_RS09230 0.71 +0.9
1,952,122 - RR42_RS09230 0.71 +0.2
1,952,122 - RR42_RS09230 0.71 +0.2
1,952,310 + RR42_RS09230 0.86 +0.6
1,952,311 - RR42_RS09230 0.86 +0.7
1,952,344 - RR42_RS09230 0.88 +0.8
1,952,352 + RR42_RS09230 0.89 +0.0
1,952,352 + RR42_RS09230 0.89 +0.7
1,952,353 - RR42_RS09230 0.89 -0.6
1,952,356 - RR42_RS09230 0.89 +0.8
1,952,608 + +0.7
1,952,609 - -1.0
1,952,609 - -0.7
1,952,892 + RR42_RS09235 0.20 -1.6
1,952,893 - RR42_RS09235 0.20 -0.0
1,952,893 - RR42_RS09235 0.20 -0.1
1,952,893 - RR42_RS09235 0.20 +0.9
1,952,893 - RR42_RS09235 0.20 +1.3
1,952,934 - RR42_RS09235 0.23 -0.4
1,953,075 + RR42_RS09235 0.33 -0.6
1,953,475 - RR42_RS09235 0.60 -1.6

Or see this region's nucleotide sequence