Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08245 and RR42_RS08250 are separated by 135 nucleotides RR42_RS08250 and RR42_RS08255 are separated by 52 nucleotides RR42_RS08255 and RR42_RS08260 are separated by 3 nucleotides RR42_RS08260 and RR42_RS08265 are separated by 9 nucleotides
RR42_RS08245: RR42_RS08245 - hypothetical protein, at 1,750,550 to 1,751,347
_RS08245
RR42_RS08250: RR42_RS08250 - coat protein, at 1,751,483 to 1,752,649
_RS08250
RR42_RS08255: RR42_RS08255 - hypothetical protein, at 1,752,702 to 1,753,112
_RS08255
RR42_RS08260: RR42_RS08260 - hypothetical protein, at 1,753,116 to 1,753,511
_RS08260
RR42_RS08265: RR42_RS08265 - hypothetical protein, at 1,753,521 to 1,753,964
_RS08265
Position (kb)
1751
1752
1753 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1750.607 kb on + strand at 1750.608 kb on - strand at 1751.078 kb on + strand, within RR42_RS08245 at 1751.256 kb on - strand, within RR42_RS08245 at 1751.722 kb on + strand, within RR42_RS08250 at 1751.722 kb on + strand, within RR42_RS08250 at 1751.789 kb on + strand, within RR42_RS08250 at 1751.873 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.581 kb on + strand at 1753.153 kb on - strand at 1753.197 kb on + strand, within RR42_RS08260 at 1753.212 kb on + strand, within RR42_RS08260 at 1753.295 kb on + strand, within RR42_RS08260 at 1753.491 kb on - strand at 1753.608 kb on + strand, within RR42_RS08265
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 1,750,607 + -0.2 1,750,608 - +0.2 1,751,078 + RR42_RS08245 0.66 +0.8 1,751,256 - RR42_RS08245 0.88 -0.6 1,751,722 + RR42_RS08250 0.20 +1.8 1,751,722 + RR42_RS08250 0.20 +0.8 1,751,789 + RR42_RS08250 0.26 +0.7 1,751,873 + RR42_RS08250 0.33 -0.2 1,752,293 + RR42_RS08250 0.69 +1.2 1,752,293 + RR42_RS08250 0.69 +1.5 1,752,293 + RR42_RS08250 0.69 +2.2 1,752,293 + RR42_RS08250 0.69 +3.3 1,752,293 + RR42_RS08250 0.69 +1.1 1,752,293 + RR42_RS08250 0.69 +0.7 1,752,293 + RR42_RS08250 0.69 -0.6 1,752,293 + RR42_RS08250 0.69 +0.6 1,752,294 - RR42_RS08250 0.69 +1.6 1,752,294 - RR42_RS08250 0.69 +1.2 1,752,294 - RR42_RS08250 0.69 +1.9 1,752,581 + +0.5 1,753,153 - +0.3 1,753,197 + RR42_RS08260 0.20 +0.2 1,753,212 + RR42_RS08260 0.24 -0.0 1,753,295 + RR42_RS08260 0.45 -1.9 1,753,491 - +0.9 1,753,608 + RR42_RS08265 0.20 +0.3
Or see this region's nucleotide sequence