Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07925 and RR42_RS07930 are separated by 110 nucleotides RR42_RS07930 and RR42_RS07935 are separated by 34 nucleotides
RR42_RS07925: RR42_RS07925 - amidase, at 1,702,582 to 1,703,772
_RS07925
RR42_RS07930: RR42_RS07930 - peptide ABC transporter ATP-binding protein, at 1,703,883 to 1,704,935
_RS07930
RR42_RS07935: RR42_RS07935 - peptide ABC transporter ATPase, at 1,704,970 to 1,706,055
_RS07935
Position (kb)
1703
1704
1705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1703.015 kb on + strand, within RR42_RS07925 at 1703.016 kb on - strand, within RR42_RS07925 at 1703.016 kb on - strand, within RR42_RS07925 at 1703.265 kb on + strand, within RR42_RS07925 at 1703.266 kb on - strand, within RR42_RS07925 at 1703.486 kb on + strand, within RR42_RS07925 at 1703.486 kb on + strand, within RR42_RS07925 at 1703.581 kb on - strand, within RR42_RS07925 at 1703.732 kb on + strand at 1703.884 kb on + strand at 1703.885 kb on - strand at 1704.125 kb on + strand, within RR42_RS07930 at 1704.126 kb on - strand, within RR42_RS07930 at 1704.126 kb on - strand, within RR42_RS07930 at 1704.128 kb on - strand, within RR42_RS07930 at 1704.191 kb on - strand, within RR42_RS07930 at 1704.556 kb on + strand, within RR42_RS07930 at 1704.556 kb on + strand, within RR42_RS07930 at 1704.600 kb on + strand, within RR42_RS07930 at 1704.915 kb on + strand at 1704.915 kb on + strand at 1704.940 kb on - strand at 1704.940 kb on - strand at 1705.269 kb on - strand, within RR42_RS07935 at 1705.310 kb on + strand, within RR42_RS07935 at 1705.311 kb on - strand, within RR42_RS07935 at 1705.311 kb on - strand, within RR42_RS07935 at 1705.373 kb on + strand, within RR42_RS07935 at 1705.373 kb on + strand, within RR42_RS07935 at 1705.377 kb on + strand, within RR42_RS07935 at 1705.691 kb on + strand, within RR42_RS07935 at 1705.692 kb on - strand, within RR42_RS07935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 1,703,015 + RR42_RS07925 0.36 -0.0 1,703,016 - RR42_RS07925 0.36 +0.3 1,703,016 - RR42_RS07925 0.36 +2.0 1,703,265 + RR42_RS07925 0.57 +0.3 1,703,266 - RR42_RS07925 0.57 +1.6 1,703,486 + RR42_RS07925 0.76 +0.9 1,703,486 + RR42_RS07925 0.76 +0.6 1,703,581 - RR42_RS07925 0.84 +1.6 1,703,732 + -0.3 1,703,884 + -1.0 1,703,885 - +1.4 1,704,125 + RR42_RS07930 0.23 -0.3 1,704,126 - RR42_RS07930 0.23 -0.5 1,704,126 - RR42_RS07930 0.23 -0.2 1,704,128 - RR42_RS07930 0.23 +0.7 1,704,191 - RR42_RS07930 0.29 +1.9 1,704,556 + RR42_RS07930 0.64 -1.5 1,704,556 + RR42_RS07930 0.64 +0.1 1,704,600 + RR42_RS07930 0.68 -0.5 1,704,915 + -0.0 1,704,915 + +0.8 1,704,940 - -0.2 1,704,940 - +0.6 1,705,269 - RR42_RS07935 0.28 -0.9 1,705,310 + RR42_RS07935 0.31 +0.4 1,705,311 - RR42_RS07935 0.31 -1.4 1,705,311 - RR42_RS07935 0.31 -2.4 1,705,373 + RR42_RS07935 0.37 +0.1 1,705,373 + RR42_RS07935 0.37 -0.4 1,705,377 + RR42_RS07935 0.37 +0.4 1,705,691 + RR42_RS07935 0.66 +0.6 1,705,692 - RR42_RS07935 0.66 +0.1
Or see this region's nucleotide sequence