Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06855
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,480,119 | + | +0.4 | |||
1,480,142 | - | -0.6 | |||
1,480,142 | - | -0.1 | |||
1,480,142 | - | +0.7 | |||
1,480,153 | + | -0.4 | |||
1,480,153 | + | +1.0 | |||
1,480,154 | - | +0.2 | |||
1,480,173 | + | -1.1 | |||
1,480,335 | + | +1.7 | |||
1,480,414 | - | +0.9 | |||
1,480,414 | - | -0.9 | |||
1,480,494 | + | -1.2 | |||
1,480,495 | - | +1.3 | |||
1,480,517 | + | +0.0 | |||
1,480,556 | - | +1.1 | |||
1,480,692 | + | -1.0 | |||
1,480,693 | - | +0.1 | |||
1,480,693 | - | -1.1 | |||
1,480,968 | - | RR42_RS06855 | 0.15 | -0.6 | |
1,481,047 | - | RR42_RS06855 | 0.52 | -1.3 | |
1,481,047 | - | RR42_RS06855 | 0.52 | +0.4 | |
1,481,054 | - | RR42_RS06855 | 0.55 | -0.6 | |
1,481,054 | - | RR42_RS06855 | 0.55 | -0.9 | |
1,481,108 | - | RR42_RS06855 | 0.81 | +1.4 | |
1,481,213 | - | +1.1 | |||
1,481,381 | - | +2.9 | |||
1,481,440 | - | +0.4 | |||
1,481,611 | - | +1.2 | |||
1,481,611 | - | +1.3 | |||
1,481,611 | - | -0.9 | |||
1,481,669 | + | -1.3 | |||
1,481,811 | - | RR42_RS06860 | 0.69 | +0.3 | |
1,481,811 | - | RR42_RS06860 | 0.69 | +0.1 | |
1,481,858 | - | +0.0 | |||
1,481,908 | - | +1.1 | |||
1,481,966 | - | +0.1 | |||
1,482,033 | - | -1.8 | |||
1,482,033 | - | +0.4 | |||
1,482,033 | - | -1.1 | |||
1,482,038 | - | +0.4 | |||
1,482,046 | - | -1.4 | |||
1,482,046 | - | -0.9 |
Or see this region's nucleotide sequence