Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06510
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,423,934 | - | RR42_RS06505 | 0.26 | +0.0 | |
1,424,158 | - | RR42_RS06505 | 0.51 | +0.8 | |
1,424,238 | + | RR42_RS06505 | 0.60 | +0.4 | |
1,424,238 | + | RR42_RS06505 | 0.60 | +0.3 | |
1,424,540 | + | -1.5 | |||
1,424,540 | + | -0.4 | |||
1,424,540 | + | -0.0 | |||
1,424,540 | + | -0.1 | |||
1,424,540 | + | -1.0 | |||
1,424,540 | + | -0.3 | |||
1,424,540 | + | -0.5 | |||
1,424,541 | - | -1.2 | |||
1,424,544 | + | -1.3 | |||
1,424,544 | + | +1.3 | |||
1,424,545 | - | +1.0 | |||
1,424,545 | - | -0.5 | |||
1,424,545 | - | -0.7 | |||
1,424,751 | + | +0.7 | |||
1,424,751 | + | +1.8 | |||
1,424,752 | - | -0.3 | |||
1,424,827 | + | RR42_RS06510 | 0.19 | -0.5 | |
1,425,155 | + | RR42_RS06510 | 0.90 | -0.0 | |
1,425,155 | + | RR42_RS06510 | 0.90 | +0.7 | |
1,425,155 | + | RR42_RS06510 | 0.90 | +1.2 | |
1,425,156 | - | -1.5 | |||
1,425,156 | - | +0.8 | |||
1,425,165 | + | +0.8 | |||
1,425,166 | - | +0.8 | |||
1,425,166 | - | -0.4 | |||
1,425,259 | + | +0.3 | |||
1,425,259 | + | -1.3 | |||
1,425,259 | + | +0.3 | |||
1,425,259 | + | +1.0 | |||
1,425,259 | + | -0.7 | |||
1,425,260 | - | -0.3 | |||
1,425,260 | - | +0.3 | |||
1,425,260 | - | +2.0 | |||
1,425,260 | - | +0.3 | |||
1,425,260 | - | +0.9 | |||
1,425,260 | - | -1.4 | |||
1,425,271 | + | +0.4 | |||
1,425,272 | - | -0.7 |
Or see this region's nucleotide sequence