Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06120
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,343,417 | - | RR42_RS06115 | 0.69 | -1.3 | |
1,344,097 | - | -0.3 | |||
1,344,097 | - | +0.6 | |||
1,344,115 | + | -1.5 | |||
1,344,116 | - | -0.2 | |||
1,344,131 | - | +1.0 | |||
1,344,340 | - | RR42_RS06120 | 0.26 | +0.4 | |
1,344,640 | - | RR42_RS06120 | 0.58 | +1.0 | |
1,344,970 | - | +1.0 | |||
1,344,970 | - | +1.8 | |||
1,345,008 | + | +0.7 | |||
1,345,009 | - | -0.3 | |||
1,345,009 | - | +2.0 | |||
1,345,009 | - | -2.0 | |||
1,345,119 | - | -1.3 | |||
1,345,122 | + | -0.5 | |||
1,345,122 | + | +0.8 | |||
1,345,132 | - | -0.7 | |||
1,345,135 | - | -1.5 | |||
1,345,187 | + | -0.3 | |||
1,345,212 | - | -0.8 | |||
1,345,261 | - | +0.5 | |||
1,345,262 | + | +0.3 | |||
1,345,262 | + | +2.0 | |||
1,345,263 | - | -0.9 | |||
1,345,305 | + | -0.6 | |||
1,345,306 | - | -0.3 | |||
1,345,306 | - | +0.0 | |||
1,345,306 | - | +0.5 | |||
1,345,306 | - | -2.4 | |||
1,345,438 | - | +1.0 | |||
1,345,438 | - | +0.6 | |||
1,345,590 | + | RR42_RS06125 | 0.12 | +0.4 | |
1,345,591 | - | RR42_RS06125 | 0.12 | -0.2 |
Or see this region's nucleotide sequence