Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06080
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,332,836 | - | +1.5 | |||
1,332,836 | - | -0.0 | |||
1,332,836 | - | +0.3 | |||
1,332,896 | - | -1.0 | |||
1,332,896 | - | -1.0 | |||
1,333,553 | - | +1.2 | |||
1,334,834 | - | +0.3 | |||
1,334,912 | + | +0.5 | |||
1,335,005 | + | +0.3 | |||
1,335,006 | - | +0.9 | |||
1,335,006 | - | +0.5 | |||
1,335,006 | - | +0.5 | |||
1,335,006 | - | -0.2 | |||
1,335,009 | + | -0.9 | |||
1,335,009 | + | +1.3 | |||
1,335,010 | - | -1.5 | |||
1,335,010 | - | +0.1 | |||
1,335,010 | - | +0.5 | |||
1,335,141 | + | RR42_RS06085 | 0.17 | +0.4 | |
1,335,141 | + | RR42_RS06085 | 0.17 | +1.2 | |
1,335,171 | + | RR42_RS06085 | 0.22 | +0.3 | |
1,335,171 | + | RR42_RS06085 | 0.22 | +0.9 | |
1,335,172 | - | RR42_RS06085 | 0.22 | -0.3 | |
1,335,172 | - | RR42_RS06085 | 0.22 | -1.3 | |
1,335,172 | - | RR42_RS06085 | 0.22 | -0.4 |
Or see this region's nucleotide sequence