Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05990

Experiment: R2A with Cisplatin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cisplatin 0.001 mg/ml
1,315,827	+		RR42_RS05985	0.42	+0.7
1,315,827	+		RR42_RS05985	0.42	-0.8
1,315,830	-		RR42_RS05985	0.42	-1.0
1,315,996	-		RR42_RS05985	0.55	+0.7
1,315,996	-		RR42_RS05985	0.55	+0.6
1,315,996	-		RR42_RS05985	0.55	-1.5
1,316,060	+		RR42_RS05985	0.60	-0.6
1,316,060	+		RR42_RS05985	0.60	-1.0
1,316,060	+		RR42_RS05985	0.60	+0.0
1,316,060	+		RR42_RS05985	0.60	+1.1
1,316,061	-		RR42_RS05985	0.61	+2.5
1,316,061	-		RR42_RS05985	0.61	-1.0
1,316,061	-		RR42_RS05985	0.61	-0.4
1,316,061	-		RR42_RS05985	0.61	-0.5
1,316,069	+		RR42_RS05985	0.61	-1.7
1,316,069	+		RR42_RS05985	0.61	+0.3
1,316,070	-		RR42_RS05985	0.61	+0.3
1,316,135	+		RR42_RS05985	0.67	+0.8
1,316,135	+		RR42_RS05985	0.67	-0.5
1,316,135	+		RR42_RS05985	0.67	+0.3
1,316,135	+		RR42_RS05985	0.67	+0.1
1,316,135	+		RR42_RS05985	0.67	-0.8
1,316,135	+		RR42_RS05985	0.67	-1.4
1,316,136	-		RR42_RS05985	0.67	+0.3
1,316,543	+				+0.5
1,316,544	-				+0.5
1,316,562	+				+0.5
1,316,603	+				+0.7
1,316,604	-				-0.4
1,316,609	+				+0.3
1,316,609	+				-0.2
1,316,627	+				-2.0
1,316,628	-				-2.0
1,316,642	+				-1.4
1,316,650	+				+0.3
1,316,676	+				+0.4
1,316,676	+				+0.5
1,316,676	+				-0.4
1,316,676	+				-0.1
1,316,677	-				-0.2
1,316,677	-				+0.3
1,316,677	-				+0.4
1,316,677	-				-0.4
1,316,677	-				+1.1
1,316,677	-				+0.1
1,316,678	+				+1.8
1,316,678	+				+0.7
1,316,679	-				+0.0
1,316,679	-				-0.2
1,316,679	-				-0.2
1,316,679	-				+1.3
1,316,683	+				+0.2
1,316,684	-				-2.1
1,316,688	+				-1.0
1,316,688	+				+0.5
1,316,689	-				+0.8
1,316,712	+				-1.1
1,316,726	+				+0.0
1,316,727	-				-0.9
1,316,727	-				+0.1
1,316,819	-				-0.4
1,316,913	+				-1.9
1,316,913	+				+1.1
1,316,914	-				-0.5
1,316,936	+				-2.1
1,316,936	+				-0.4
1,316,936	+				+0.2
1,316,937	-				+0.5
1,317,168	+		RR42_RS05990	0.29	-0.3
1,317,169	-		RR42_RS05990	0.29	+0.3
1,317,169	-		RR42_RS05990	0.29	+0.2
1,317,265	-		RR42_RS05990	0.37	-0.3
1,317,376	-		RR42_RS05990	0.46	-1.4
1,317,511	-		RR42_RS05990	0.57	+0.7
1,317,568	-		RR42_RS05990	0.62	+2.0
1,317,568	-		RR42_RS05990	0.62	+0.0
1,317,570	+		RR42_RS05990	0.62	+0.2
1,317,576	+		RR42_RS05990	0.63	+0.6
1,317,576	+		RR42_RS05990	0.63	+0.4
1,317,576	+		RR42_RS05990	0.63	-1.4
1,317,577	-		RR42_RS05990	0.63	+0.6
1,317,795	+		RR42_RS05990	0.81	-1.8
1,317,823	-		RR42_RS05990	0.83	+0.1
1,317,909	+				-0.3
1,317,910	-				+0.3
1,317,910	-				-0.2
1,318,041	+				+0.2
1,318,041	+				+0.5
1,318,041	+				-1.1
1,318,041	+				+0.8
1,318,042	-				+0.7
1,318,042	-				+0.2
1,318,042	-				+1.3
1,318,042	-				-1.8
1,318,042	-				+0.2
1,318,042	-				+1.2
1,318,042	-				-0.5
1,318,042	-				-0.8
1,318,042	-				+0.2
1,318,046	-				-1.3
1,318,063	+				-0.1
1,318,111	+				-0.5
1,318,141	+				-0.4
1,318,141	+				+3.3
1,318,141	+				+0.4
1,318,141	+				+0.5
1,318,141	+				+0.5
1,318,142	-				-1.6
1,318,178	+				-0.9
1,318,179	-				-2.1
1,318,258	-				-2.1
1,318,266	+				-1.0
1,318,266	+				-0.3
1,318,336	-				-1.1
1,318,456	-				+2.0
1,318,509	+		RR42_RS05995	0.16	-2.2
1,318,510	-		RR42_RS05995	0.16	-2.9
1,318,510	-		RR42_RS05995	0.16	-1.4
1,318,510	-		RR42_RS05995	0.16	-2.5
1,318,512	+		RR42_RS05995	0.16	-0.3
1,318,513	-		RR42_RS05995	0.16	-2.2
1,318,513	-		RR42_RS05995	0.16	-3.1
1,318,518	+		RR42_RS05995	0.16	-1.3
1,318,522	-		RR42_RS05995	0.16	-2.1
1,318,522	-		RR42_RS05995	0.16	-2.4
1,318,536	+		RR42_RS05995	0.17	-3.5
1,318,537	-		RR42_RS05995	0.17	-2.3
1,318,537	-		RR42_RS05995	0.17	-3.5
1,318,589	+		RR42_RS05995	0.19	-1.3
1,318,590	-		RR42_RS05995	0.20	-3.6
1,318,671	+		RR42_RS05995	0.23	-1.4
1,318,671	+		RR42_RS05995	0.23	-3.1
1,318,671	+		RR42_RS05995	0.23	-2.8
1,318,671	+		RR42_RS05995	0.23	-1.1
1,318,671	+		RR42_RS05995	0.23	-1.5
1,318,671	+		RR42_RS05995	0.23	-1.8
1,318,671	+		RR42_RS05995	0.23	-0.5
1,318,671	+		RR42_RS05995	0.23	-2.7
1,318,671	+		RR42_RS05995	0.23	+0.5
1,318,671	+		RR42_RS05995	0.23	-2.2
1,318,671	+		RR42_RS05995	0.23	-1.0
1,318,672	-		RR42_RS05995	0.23	-1.1
1,318,672	-		RR42_RS05995	0.23	-3.0
1,318,672	-		RR42_RS05995	0.23	-0.6
1,318,696	-		RR42_RS05995	0.25	+1.0
1,318,696	-		RR42_RS05995	0.25	-0.3
1,318,776	+		RR42_RS05995	0.28	-2.3
1,318,776	+		RR42_RS05995	0.28	-1.4
1,318,777	-		RR42_RS05995	0.28	-3.0
1,318,777	-		RR42_RS05995	0.28	-2.8
1,318,829	+		RR42_RS05995	0.31	-0.5
1,318,981	-		RR42_RS05995	0.38	+1.0
1,318,981	-		RR42_RS05995	0.38	-1.5
1,318,981	-		RR42_RS05995	0.38	-2.2
1,318,981	-		RR42_RS05995	0.38	-2.5