Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05325

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05320 and RR42_RS05325 are separated by 63 nucleotidesRR42_RS05325 and RR42_RS05330 overlap by 4 nucleotides RR42_RS05320: RR42_RS05320 - guanine deaminase, at 1,175,430 to 1,176,761 _RS05320 RR42_RS05325: RR42_RS05325 - adenine deaminase, at 1,176,825 to 1,177,871 _RS05325 RR42_RS05330: RR42_RS05330 - xanthine dehydrogenase, at 1,177,868 to 1,178,902 _RS05330 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1 2at 1175.833 kb on + strand, within RR42_RS05320at 1175.926 kb on + strand, within RR42_RS05320at 1175.927 kb on - strand, within RR42_RS05320at 1175.941 kb on + strand, within RR42_RS05320at 1175.977 kb on + strand, within RR42_RS05320at 1175.977 kb on + strand, within RR42_RS05320at 1175.977 kb on + strand, within RR42_RS05320at 1175.977 kb on + strand, within RR42_RS05320at 1175.978 kb on - strand, within RR42_RS05320at 1175.978 kb on - strand, within RR42_RS05320at 1176.144 kb on - strand, within RR42_RS05320at 1176.151 kb on + strand, within RR42_RS05320at 1176.410 kb on - strand, within RR42_RS05320at 1176.446 kb on + strand, within RR42_RS05320at 1176.446 kb on + strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.447 kb on - strand, within RR42_RS05320at 1176.448 kb on + strand, within RR42_RS05320at 1176.448 kb on + strand, within RR42_RS05320at 1176.448 kb on + strand, within RR42_RS05320at 1176.448 kb on + strand, within RR42_RS05320at 1176.448 kb on + strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.449 kb on - strand, within RR42_RS05320at 1176.662 kb on - strandat 1176.667 kb on + strandat 1176.668 kb on - strandat 1177.004 kb on + strand, within RR42_RS05325at 1177.004 kb on + strand, within RR42_RS05325at 1177.005 kb on - strand, within RR42_RS05325at 1177.005 kb on - strand, within RR42_RS05325at 1177.100 kb on - strand, within RR42_RS05325at 1177.475 kb on - strand, within RR42_RS05325at 1177.547 kb on + strand, within RR42_RS05325at 1177.548 kb on - strand, within RR42_RS05325at 1177.613 kb on - strand, within RR42_RS05325at 1177.613 kb on - strand, within RR42_RS05325at 1177.670 kb on - strand, within RR42_RS05325at 1177.672 kb on + strand, within RR42_RS05325at 1177.672 kb on + strand, within RR42_RS05325at 1177.672 kb on + strand, within RR42_RS05325at 1177.672 kb on + strand, within RR42_RS05325at 1177.673 kb on - strand, within RR42_RS05325at 1177.673 kb on - strand, within RR42_RS05325at 1177.708 kb on + strand, within RR42_RS05325at 1177.709 kb on - strand, within RR42_RS05325at 1177.738 kb on + strand, within RR42_RS05325at 1177.743 kb on + strand, within RR42_RS05325at 1178.142 kb on + strand, within RR42_RS05330at 1178.220 kb on + strand, within RR42_RS05330at 1178.221 kb on - strand, within RR42_RS05330

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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1,175,833 + RR42_RS05320 0.30 -0.9
1,175,926 + RR42_RS05320 0.37 -1.5
1,175,927 - RR42_RS05320 0.37 -0.3
1,175,941 + RR42_RS05320 0.38 -0.1
1,175,977 + RR42_RS05320 0.41 +0.3
1,175,977 + RR42_RS05320 0.41 +2.3
1,175,977 + RR42_RS05320 0.41 +0.5
1,175,977 + RR42_RS05320 0.41 -1.4
1,175,978 - RR42_RS05320 0.41 +0.6
1,175,978 - RR42_RS05320 0.41 +0.0
1,176,144 - RR42_RS05320 0.54 -0.1
1,176,151 + RR42_RS05320 0.54 -0.5
1,176,410 - RR42_RS05320 0.74 -0.4
1,176,446 + RR42_RS05320 0.76 -0.8
1,176,446 + RR42_RS05320 0.76 -0.9
1,176,447 - RR42_RS05320 0.76 +1.2
1,176,447 - RR42_RS05320 0.76 -0.4
1,176,447 - RR42_RS05320 0.76 -1.3
1,176,447 - RR42_RS05320 0.76 -0.5
1,176,447 - RR42_RS05320 0.76 +0.3
1,176,447 - RR42_RS05320 0.76 -1.5
1,176,448 + RR42_RS05320 0.76 +2.0
1,176,448 + RR42_RS05320 0.76 +0.0
1,176,448 + RR42_RS05320 0.76 +0.7
1,176,448 + RR42_RS05320 0.76 +0.5
1,176,448 + RR42_RS05320 0.76 -0.8
1,176,449 - RR42_RS05320 0.77 +2.0
1,176,449 - RR42_RS05320 0.77 -0.4
1,176,449 - RR42_RS05320 0.77 -0.2
1,176,449 - RR42_RS05320 0.77 +0.5
1,176,449 - RR42_RS05320 0.77 -0.4
1,176,449 - RR42_RS05320 0.77 -0.0
1,176,662 - -0.6
1,176,667 + +0.7
1,176,668 - +0.8
1,177,004 + RR42_RS05325 0.17 -0.1
1,177,004 + RR42_RS05325 0.17 -1.3
1,177,005 - RR42_RS05325 0.17 +2.0
1,177,005 - RR42_RS05325 0.17 +0.6
1,177,100 - RR42_RS05325 0.26 -1.0
1,177,475 - RR42_RS05325 0.62 -0.7
1,177,547 + RR42_RS05325 0.69 -2.6
1,177,548 - RR42_RS05325 0.69 +0.2
1,177,613 - RR42_RS05325 0.75 -1.0
1,177,613 - RR42_RS05325 0.75 +0.1
1,177,670 - RR42_RS05325 0.81 +0.0
1,177,672 + RR42_RS05325 0.81 -1.4
1,177,672 + RR42_RS05325 0.81 -1.0
1,177,672 + RR42_RS05325 0.81 -1.3
1,177,672 + RR42_RS05325 0.81 +0.4
1,177,673 - RR42_RS05325 0.81 +0.7
1,177,673 - RR42_RS05325 0.81 -0.3
1,177,708 + RR42_RS05325 0.84 -0.2
1,177,709 - RR42_RS05325 0.84 -0.2
1,177,738 + RR42_RS05325 0.87 -0.5
1,177,743 + RR42_RS05325 0.88 +1.0
1,178,142 + RR42_RS05330 0.26 -0.1
1,178,220 + RR42_RS05330 0.34 -0.3
1,178,221 - RR42_RS05330 0.34 -0.0

Or see this region's nucleotide sequence