Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04980

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04975 and RR42_RS04980 are separated by 206 nucleotidesRR42_RS04980 and RR42_RS04985 are separated by 172 nucleotides RR42_RS04975: RR42_RS04975 - histidine kinase, at 1,099,106 to 1,100,581 _RS04975 RR42_RS04980: RR42_RS04980 - hypothetical protein, at 1,100,788 to 1,101,189 _RS04980 RR42_RS04985: RR42_RS04985 - 2-aminoadipate aminotransferase, at 1,101,362 to 1,102,804 _RS04985 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -2 -1 0 1 2at 1099.811 kb on - strand, within RR42_RS04975at 1099.811 kb on - strand, within RR42_RS04975at 1100.067 kb on + strand, within RR42_RS04975at 1100.068 kb on - strand, within RR42_RS04975at 1100.068 kb on - strand, within RR42_RS04975at 1100.214 kb on + strand, within RR42_RS04975at 1100.214 kb on + strand, within RR42_RS04975at 1100.215 kb on - strand, within RR42_RS04975at 1100.215 kb on - strand, within RR42_RS04975at 1100.215 kb on - strand, within RR42_RS04975at 1100.215 kb on - strand, within RR42_RS04975at 1100.215 kb on - strand, within RR42_RS04975at 1100.290 kb on + strand, within RR42_RS04975at 1100.291 kb on - strand, within RR42_RS04975at 1100.318 kb on - strand, within RR42_RS04975at 1100.544 kb on + strandat 1100.544 kb on + strandat 1100.544 kb on + strandat 1100.545 kb on - strandat 1100.716 kb on + strandat 1100.717 kb on - strandat 1100.717 kb on - strandat 1100.721 kb on + strandat 1100.740 kb on - strandat 1100.740 kb on - strandat 1100.745 kb on + strandat 1100.746 kb on - strandat 1101.000 kb on + strand, within RR42_RS04980at 1101.001 kb on - strand, within RR42_RS04980at 1101.768 kb on + strand, within RR42_RS04985at 1101.768 kb on + strand, within RR42_RS04985at 1101.769 kb on - strand, within RR42_RS04985at 1102.060 kb on + strand, within RR42_RS04985at 1102.068 kb on + strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.176 kb on + strand, within RR42_RS04985at 1102.176 kb on + strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.179 kb on + strand, within RR42_RS04985at 1102.179 kb on + strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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1,099,811 - RR42_RS04975 0.48 +0.9
1,099,811 - RR42_RS04975 0.48 -0.5
1,100,067 + RR42_RS04975 0.65 -1.1
1,100,068 - RR42_RS04975 0.65 +0.3
1,100,068 - RR42_RS04975 0.65 +1.1
1,100,214 + RR42_RS04975 0.75 -0.7
1,100,214 + RR42_RS04975 0.75 +0.8
1,100,215 - RR42_RS04975 0.75 -0.6
1,100,215 - RR42_RS04975 0.75 -1.3
1,100,215 - RR42_RS04975 0.75 -0.8
1,100,215 - RR42_RS04975 0.75 +0.5
1,100,215 - RR42_RS04975 0.75 +2.1
1,100,290 + RR42_RS04975 0.80 -0.5
1,100,291 - RR42_RS04975 0.80 -0.1
1,100,318 - RR42_RS04975 0.82 -0.6
1,100,544 + +0.0
1,100,544 + -0.3
1,100,544 + +0.7
1,100,545 - -0.0
1,100,716 + -0.2
1,100,717 - -0.8
1,100,717 - +0.5
1,100,721 + -1.6
1,100,740 - -0.3
1,100,740 - -0.8
1,100,745 + +0.2
1,100,746 - +1.1
1,101,000 + RR42_RS04980 0.53 +1.1
1,101,001 - RR42_RS04980 0.53 -1.1
1,101,768 + RR42_RS04985 0.28 -1.5
1,101,768 + RR42_RS04985 0.28 +0.3
1,101,769 - RR42_RS04985 0.28 -0.3
1,102,060 + RR42_RS04985 0.48 -0.1
1,102,068 + RR42_RS04985 0.49 +0.4
1,102,069 - RR42_RS04985 0.49 -0.1
1,102,069 - RR42_RS04985 0.49 +1.4
1,102,069 - RR42_RS04985 0.49 -0.4
1,102,176 + RR42_RS04985 0.56 +0.6
1,102,176 + RR42_RS04985 0.56 -0.9
1,102,177 - RR42_RS04985 0.56 -1.1
1,102,177 - RR42_RS04985 0.56 -0.8
1,102,177 - RR42_RS04985 0.56 +0.9
1,102,179 + RR42_RS04985 0.57 +0.7
1,102,179 + RR42_RS04985 0.57 -2.2
1,102,180 - RR42_RS04985 0.57 +0.4
1,102,180 - RR42_RS04985 0.57 +0.4
1,102,180 - RR42_RS04985 0.57 -0.2

Or see this region's nucleotide sequence