Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04225 and RR42_RS04230 are separated by 426 nucleotides RR42_RS04230 and RR42_RS04235 are separated by 788 nucleotides
RR42_RS04225: RR42_RS04225 - hypothetical protein, at 934,682 to 935,302
_RS04225
RR42_RS04230: RR42_RS04230 - dihydrodipicolinate synthase, at 935,729 to 936,637
_RS04230
RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715
_RS04235
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 934.806 kb on + strand, within RR42_RS04225 at 934.807 kb on - strand, within RR42_RS04225 at 934.807 kb on - strand, within RR42_RS04225 at 934.826 kb on - strand, within RR42_RS04225 at 934.827 kb on + strand, within RR42_RS04225 at 934.827 kb on + strand, within RR42_RS04225 at 934.828 kb on - strand, within RR42_RS04225 at 934.828 kb on - strand, within RR42_RS04225 at 934.828 kb on - strand, within RR42_RS04225 at 934.828 kb on - strand, within RR42_RS04225 at 935.091 kb on + strand, within RR42_RS04225 at 935.092 kb on - strand, within RR42_RS04225 at 935.092 kb on - strand, within RR42_RS04225 at 935.105 kb on - strand, within RR42_RS04225 at 935.143 kb on - strand, within RR42_RS04225 at 935.205 kb on + strand, within RR42_RS04225 at 935.205 kb on + strand, within RR42_RS04225 at 935.258 kb on + strand at 935.258 kb on + strand at 935.335 kb on + strand at 935.336 kb on - strand at 935.336 kb on - strand at 935.362 kb on + strand at 935.363 kb on - strand at 935.613 kb on + strand at 935.613 kb on + strand at 935.614 kb on - strand at 935.614 kb on - strand at 935.614 kb on - strand at 935.714 kb on + strand at 935.714 kb on + strand at 935.739 kb on + strand at 935.740 kb on - strand at 935.748 kb on + strand at 935.748 kb on + strand at 935.748 kb on + strand at 935.748 kb on + strand at 935.749 kb on - strand at 935.749 kb on - strand at 935.843 kb on + strand, within RR42_RS04230 at 936.068 kb on + strand, within RR42_RS04230 at 936.068 kb on + strand, within RR42_RS04230 at 936.068 kb on + strand, within RR42_RS04230 at 936.147 kb on - strand, within RR42_RS04230 at 936.147 kb on - strand, within RR42_RS04230 at 936.147 kb on - strand, within RR42_RS04230 at 936.248 kb on + strand, within RR42_RS04230 at 936.249 kb on - strand, within RR42_RS04230 at 936.249 kb on - strand, within RR42_RS04230 at 936.645 kb on - strand at 936.645 kb on - strand at 936.691 kb on + strand at 936.691 kb on + strand at 936.707 kb on + strand at 936.707 kb on + strand at 936.708 kb on - strand at 936.708 kb on - strand at 936.708 kb on - strand at 936.725 kb on + strand at 936.725 kb on + strand at 936.725 kb on + strand at 936.726 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 937.042 kb on + strand at 937.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 934,806 + RR42_RS04225 0.20 -0.3 934,807 - RR42_RS04225 0.20 +0.0 934,807 - RR42_RS04225 0.20 -1.2 934,826 - RR42_RS04225 0.23 -1.2 934,827 + RR42_RS04225 0.23 +0.9 934,827 + RR42_RS04225 0.23 +0.7 934,828 - RR42_RS04225 0.24 -0.5 934,828 - RR42_RS04225 0.24 +0.3 934,828 - RR42_RS04225 0.24 +0.2 934,828 - RR42_RS04225 0.24 +0.2 935,091 + RR42_RS04225 0.66 +0.1 935,092 - RR42_RS04225 0.66 -0.9 935,092 - RR42_RS04225 0.66 +0.3 935,105 - RR42_RS04225 0.68 +0.2 935,143 - RR42_RS04225 0.74 +1.0 935,205 + RR42_RS04225 0.84 +0.6 935,205 + RR42_RS04225 0.84 -1.5 935,258 + +0.0 935,258 + -1.2 935,335 + +0.9 935,336 - +0.3 935,336 - +0.5 935,362 + +0.4 935,363 - +0.4 935,613 + -0.4 935,613 + +0.7 935,614 - -1.2 935,614 - +0.5 935,614 - +0.2 935,714 + -0.1 935,714 + +0.9 935,739 + +0.4 935,740 - +1.4 935,748 + -0.7 935,748 + +0.0 935,748 + +0.3 935,748 + +1.2 935,749 - -1.2 935,749 - -0.3 935,843 + RR42_RS04230 0.13 +1.7 936,068 + RR42_RS04230 0.37 +1.3 936,068 + RR42_RS04230 0.37 +0.6 936,068 + RR42_RS04230 0.37 -0.5 936,147 - RR42_RS04230 0.46 +0.0 936,147 - RR42_RS04230 0.46 -1.2 936,147 - RR42_RS04230 0.46 -0.3 936,248 + RR42_RS04230 0.57 +0.4 936,249 - RR42_RS04230 0.57 -1.6 936,249 - RR42_RS04230 0.57 -1.0 936,645 - -0.3 936,645 - +1.0 936,691 + -0.1 936,691 + -1.2 936,707 + -1.6 936,707 + +0.9 936,708 - -2.0 936,708 - -0.3 936,708 - +2.0 936,725 + -0.1 936,725 + +0.0 936,725 + +1.4 936,726 - -0.4 936,776 - +0.5 936,776 - -1.1 936,776 - +3.4 936,776 - +0.5 937,042 + +0.6 937,371 - +0.8
Or see this region's nucleotide sequence