Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04085
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
904,067 | - | -1.8 | |||
904,067 | - | -0.4 | |||
904,100 | + | -0.3 | |||
904,116 | - | +0.6 | |||
904,116 | - | -0.3 | |||
904,161 | + | +0.7 | |||
904,175 | - | -0.3 | |||
904,208 | + | -0.7 | |||
904,208 | + | -0.7 | |||
904,209 | - | +0.2 | |||
904,223 | + | -2.6 | |||
904,274 | + | -0.6 | |||
904,274 | + | +0.2 | |||
904,274 | + | +0.9 | |||
904,329 | + | RR42_RS04085 | 0.15 | +1.0 | |
904,335 | + | RR42_RS04085 | 0.16 | -0.3 | |
904,336 | - | RR42_RS04085 | 0.16 | +1.8 | |
904,665 | - | RR42_RS04085 | 0.58 | -0.1 | |
904,815 | - | RR42_RS04085 | 0.77 | +0.8 | |
904,815 | - | RR42_RS04085 | 0.77 | -0.2 | |
904,839 | - | RR42_RS04085 | 0.80 | +0.0 | |
905,125 | + | +2.0 | |||
905,126 | - | -0.3 | |||
905,303 | + | -2.1 | |||
905,303 | + | -1.1 | |||
905,303 | + | +0.2 | |||
905,303 | + | +3.0 | |||
905,303 | + | -0.2 | |||
905,346 | - | RR42_RS04090 | 0.11 | +0.5 | |
905,886 | + | RR42_RS04090 | 0.68 | -0.3 | |
905,887 | - | RR42_RS04090 | 0.68 | +0.8 |
Or see this region's nucleotide sequence