Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04055

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04050 and RR42_RS04055 are separated by 255 nucleotidesRR42_RS04055 and RR42_RS04060 are separated by 593 nucleotidesRR42_RS04060 and RR42_RS04065 are separated by 148 nucleotides RR42_RS04050: RR42_RS04050 - Crp/Fnr family transcriptional regulator, at 897,306 to 898,028 _RS04050 RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745 _RS04055 RR42_RS04060: RR42_RS04060 - hypothetical protein, at 899,339 to 899,554 _RS04060 RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566 _RS04065 Position (kb) 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 897.433 kb on - strand, within RR42_RS04050at 897.881 kb on + strand, within RR42_RS04050at 897.973 kb on + strandat 898.026 kb on + strandat 898.027 kb on - strandat 898.063 kb on - strandat 898.242 kb on - strandat 898.243 kb on + strandat 898.243 kb on + strandat 898.545 kb on + strand, within RR42_RS04055at 898.546 kb on - strand, within RR42_RS04055at 898.778 kb on + strandat 898.779 kb on - strandat 898.779 kb on - strandat 898.820 kb on + strandat 898.821 kb on - strandat 898.821 kb on - strandat 898.859 kb on + strandat 898.875 kb on + strandat 899.071 kb on + strandat 899.072 kb on - strandat 899.212 kb on + strandat 899.212 kb on + strandat 899.212 kb on + strandat 899.212 kb on + strandat 899.213 kb on - strandat 899.213 kb on - strandat 899.213 kb on - strandat 899.242 kb on + strandat 899.242 kb on + strandat 899.450 kb on + strand, within RR42_RS04060at 899.451 kb on - strand, within RR42_RS04060at 899.457 kb on - strand, within RR42_RS04060at 899.519 kb on + strand, within RR42_RS04060at 899.673 kb on + strandat 899.682 kb on + strandat 899.717 kb on + strandat 899.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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897,433 - RR42_RS04050 0.18 +0.2
897,881 + RR42_RS04050 0.80 +0.4
897,973 + -2.1
898,026 + -1.8
898,027 - -0.0
898,063 - -0.7
898,242 - +0.1
898,243 + -0.8
898,243 + +0.9
898,545 + RR42_RS04055 0.56 -0.3
898,546 - RR42_RS04055 0.57 +1.1
898,778 + +0.9
898,779 - +1.7
898,779 - +2.5
898,820 + +1.4
898,821 - -0.3
898,821 - +1.8
898,859 + +0.0
898,875 + -0.4
899,071 + -0.9
899,072 - -0.8
899,212 + +1.6
899,212 + +0.0
899,212 + +0.4
899,212 + -1.0
899,213 - -1.0
899,213 - -0.9
899,213 - +1.2
899,242 + -0.3
899,242 + +1.4
899,450 + RR42_RS04060 0.51 -2.2
899,451 - RR42_RS04060 0.52 -0.7
899,457 - RR42_RS04060 0.55 +0.0
899,519 + RR42_RS04060 0.83 -1.7
899,673 + +0.7
899,682 + -1.0
899,717 + +0.4
899,718 - -0.4

Or see this region's nucleotide sequence