Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04040 and RR42_RS04045 are separated by 122 nucleotides RR42_RS04045 and RR42_RS04050 are separated by 48 nucleotides RR42_RS04050 and RR42_RS04055 are separated by 255 nucleotides
RR42_RS04040: RR42_RS04040 - hypothetical protein, at 896,239 to 896,526
_RS04040
RR42_RS04045: RR42_RS04045 - proline hydroxylase, at 896,649 to 897,257
_RS04045
RR42_RS04050: RR42_RS04050 - Crp/Fnr family transcriptional regulator, at 897,306 to 898,028
_RS04050
RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745
_RS04055
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.500 kb on + strand at 896.501 kb on - strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.995 kb on - strand, within RR42_RS04045 at 896.995 kb on - strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.197 kb on - strand at 897.282 kb on + strand at 897.433 kb on - strand, within RR42_RS04050 at 897.881 kb on + strand, within RR42_RS04050 at 897.973 kb on + strand at 898.026 kb on + strand at 898.027 kb on - strand at 898.063 kb on - strand at 898.242 kb on - strand at 898.243 kb on + strand at 898.243 kb on + strand at 898.545 kb on + strand, within RR42_RS04055 at 898.546 kb on - strand, within RR42_RS04055 at 898.778 kb on + strand at 898.779 kb on - strand at 898.779 kb on - strand at 898.820 kb on + strand at 898.821 kb on - strand at 898.821 kb on - strand at 898.859 kb on + strand at 898.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 896,459 - RR42_RS04040 0.76 +0.4 896,459 - RR42_RS04040 0.76 +0.8 896,459 - RR42_RS04040 0.76 +0.8 896,459 - RR42_RS04040 0.76 -1.0 896,500 + -0.3 896,501 - +0.2 896,561 + +1.3 896,561 + +0.4 896,561 + +0.4 896,995 - RR42_RS04045 0.57 +0.9 896,995 - RR42_RS04045 0.57 +0.6 897,196 + RR42_RS04045 0.90 +0.6 897,196 + RR42_RS04045 0.90 -0.6 897,197 - +0.4 897,282 + +0.2 897,433 - RR42_RS04050 0.18 +0.2 897,881 + RR42_RS04050 0.80 +0.4 897,973 + -2.1 898,026 + -1.8 898,027 - -0.0 898,063 - -0.7 898,242 - +0.1 898,243 + -0.8 898,243 + +0.9 898,545 + RR42_RS04055 0.56 -0.3 898,546 - RR42_RS04055 0.57 +1.1 898,778 + +0.9 898,779 - +1.7 898,779 - +2.5 898,820 + +1.4 898,821 - -0.3 898,821 - +1.8 898,859 + +0.0 898,875 + -0.4
Or see this region's nucleotide sequence