Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03755 and RR42_RS03760 are separated by 88 nucleotides RR42_RS03760 and RR42_RS03765 are separated by 2 nucleotides RR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318
_RS03760
RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160
_RS03765
RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381
_RS03770
Position (kb) 829
830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.475 kb on + strand, within RR42_RS03755 at 828.475 kb on + strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.478 kb on - strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.497 kb on - strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755 at 829.433 kb on - strand at 829.784 kb on + strand, within RR42_RS03760 at 829.784 kb on + strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.786 kb on + strand, within RR42_RS03760 at 829.787 kb on - strand, within RR42_RS03760 at 829.787 kb on - strand, within RR42_RS03760 at 829.883 kb on + strand, within RR42_RS03760 at 829.938 kb on - strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.947 kb on - strand, within RR42_RS03760 at 830.265 kb on - strand, within RR42_RS03760 at 830.324 kb on + strand, within RR42_RS03760 at 830.511 kb on - strand, within RR42_RS03760 at 830.561 kb on - strand, within RR42_RS03760 at 831.036 kb on - strand, within RR42_RS03760 at 831.062 kb on + strand, within RR42_RS03760 at 831.063 kb on - strand, within RR42_RS03760 at 831.335 kb on - strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.491 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.659 kb on + strand, within RR42_RS03760 at 831.848 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 832.110 kb on - strand at 832.190 kb on + strand at 832.190 kb on + strand at 832.191 kb on - strand at 832.191 kb on - strand at 832.450 kb on + strand, within RR42_RS03765 at 832.450 kb on + strand, within RR42_RS03765 at 832.559 kb on - strand, within RR42_RS03765 at 832.762 kb on + strand, within RR42_RS03765 at 832.975 kb on + strand, within RR42_RS03765 at 833.051 kb on + strand, within RR42_RS03765 at 833.116 kb on + strand at 833.116 kb on + strand at 833.256 kb on - strand, within RR42_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 828,475 + RR42_RS03755 0.42 +0.6 828,475 + RR42_RS03755 0.42 +0.6 828,476 - RR42_RS03755 0.42 +0.1 828,476 - RR42_RS03755 0.42 -1.6 828,477 + RR42_RS03755 0.42 +0.1 828,477 + RR42_RS03755 0.42 -0.4 828,477 + RR42_RS03755 0.42 +1.4 828,477 + RR42_RS03755 0.42 +0.8 828,477 + RR42_RS03755 0.42 -2.0 828,478 - RR42_RS03755 0.42 -0.3 828,481 + RR42_RS03755 0.42 -0.7 828,481 + RR42_RS03755 0.42 -0.8 828,481 + RR42_RS03755 0.42 -0.3 828,497 - RR42_RS03755 0.44 +0.3 828,622 + RR42_RS03755 0.52 -0.9 828,622 + RR42_RS03755 0.52 +0.8 828,797 - RR42_RS03755 0.63 -0.4 828,797 - RR42_RS03755 0.63 -0.7 829,433 - -0.4 829,784 + RR42_RS03760 0.11 +0.8 829,784 + RR42_RS03760 0.11 -0.4 829,785 - RR42_RS03760 0.11 +0.6 829,785 - RR42_RS03760 0.11 -0.0 829,785 - RR42_RS03760 0.11 -1.4 829,786 + RR42_RS03760 0.11 +0.5 829,787 - RR42_RS03760 0.11 +0.4 829,787 - RR42_RS03760 0.11 +0.0 829,883 + RR42_RS03760 0.15 +2.7 829,938 - RR42_RS03760 0.17 +1.5 829,946 + RR42_RS03760 0.17 +1.3 829,946 + RR42_RS03760 0.17 +0.6 829,946 + RR42_RS03760 0.17 -0.0 829,947 - RR42_RS03760 0.17 +0.7 830,265 - RR42_RS03760 0.28 -0.7 830,324 + RR42_RS03760 0.30 -0.2 830,511 - RR42_RS03760 0.37 -0.7 830,561 - RR42_RS03760 0.38 +0.2 831,036 - RR42_RS03760 0.55 +1.1 831,062 + RR42_RS03760 0.56 +0.7 831,063 - RR42_RS03760 0.56 -0.7 831,335 - RR42_RS03760 0.66 +2.7 831,374 + RR42_RS03760 0.67 +0.6 831,374 + RR42_RS03760 0.67 +2.2 831,491 + RR42_RS03760 0.71 +0.4 831,501 + RR42_RS03760 0.71 +1.8 831,501 + RR42_RS03760 0.71 +0.7 831,659 + RR42_RS03760 0.77 -0.9 831,848 + RR42_RS03760 0.84 -1.3 831,920 + RR42_RS03760 0.86 -0.1 831,920 + RR42_RS03760 0.86 -2.5 832,110 - -0.7 832,190 + -0.7 832,190 + +0.6 832,191 - -1.0 832,191 - +2.6 832,450 + RR42_RS03765 0.15 +0.3 832,450 + RR42_RS03765 0.15 -0.3 832,559 - RR42_RS03765 0.28 +1.8 832,762 + RR42_RS03765 0.53 -0.7 832,975 + RR42_RS03765 0.78 -0.9 833,051 + RR42_RS03765 0.87 +0.2 833,116 + +0.5 833,116 + +1.1 833,256 - RR42_RS03770 0.44 -0.3
Or see this region's nucleotide sequence