Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03635 and RR42_RS03640 are separated by 61 nucleotides RR42_RS03640 and RR42_RS03645 are separated by 192 nucleotides RR42_RS03645 and RR42_RS03650 are separated by 95 nucleotides RR42_RS03650 and RR42_RS03655 are separated by 215 nucleotides RR42_RS03655 and RR42_RS03660 are separated by 66 nucleotides RR42_RS03660 and RR42_RS03665 are separated by 80 nucleotides
RR42_RS03635: RR42_RS03635 - trypsin-like serine protease, at 809,187 to 810,089
_RS03635
RR42_RS03640: RR42_RS03640 - hypothetical protein, at 810,151 to 810,435
_RS03640
RR42_RS03645: RR42_RS03645 - hypothetical protein, at 810,628 to 810,951
_RS03645
RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331
_RS03650
RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921
_RS03655
RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242
_RS03660
RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544
_RS03665
Position (kb) 811
812 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 810.087 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.118 kb on - strand at 810.175 kb on + strand at 810.176 kb on - strand at 810.192 kb on - strand, within RR42_RS03640 at 810.192 kb on - strand, within RR42_RS03640 at 810.193 kb on + strand, within RR42_RS03640 at 810.193 kb on + strand, within RR42_RS03640 at 810.194 kb on - strand, within RR42_RS03640 at 810.206 kb on - strand, within RR42_RS03640 at 810.206 kb on - strand, within RR42_RS03640 at 810.632 kb on + strand at 810.632 kb on + strand at 810.632 kb on + strand at 810.633 kb on - strand at 810.633 kb on - strand at 810.633 kb on - strand at 810.650 kb on + strand at 810.650 kb on + strand at 810.650 kb on + strand at 810.753 kb on + strand, within RR42_RS03645 at 810.753 kb on + strand, within RR42_RS03645 at 810.753 kb on + strand, within RR42_RS03645 at 810.833 kb on + strand, within RR42_RS03645 at 810.834 kb on - strand, within RR42_RS03645 at 810.834 kb on - strand, within RR42_RS03645 at 810.835 kb on + strand, within RR42_RS03645 at 810.835 kb on + strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.842 kb on + strand, within RR42_RS03645 at 810.843 kb on - strand, within RR42_RS03645 at 810.950 kb on - strand at 811.055 kb on + strand at 811.056 kb on - strand at 811.071 kb on + strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.286 kb on + strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.290 kb on - strand, within RR42_RS03650 at 811.292 kb on + strand, within RR42_RS03650 at 811.329 kb on + strand at 811.330 kb on - strand at 811.330 kb on - strand at 811.359 kb on - strand at 811.415 kb on - strand at 811.495 kb on - strand at 811.541 kb on + strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.614 kb on - strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.799 kb on + strand, within RR42_RS03655 at 811.800 kb on - strand, within RR42_RS03655 at 811.823 kb on + strand, within RR42_RS03655 at 811.824 kb on - strand, within RR42_RS03655 at 811.989 kb on + strand at 811.990 kb on - strand at 812.094 kb on + strand, within RR42_RS03660 at 812.095 kb on - strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.122 kb on + strand, within RR42_RS03660 at 812.123 kb on - strand, within RR42_RS03660 at 812.189 kb on + strand, within RR42_RS03660 at 812.301 kb on + strand at 812.322 kb on - strand at 812.327 kb on + strand at 812.328 kb on - strand at 812.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 810,087 + -0.4 810,117 + -0.5 810,117 + -2.3 810,117 + -1.3 810,117 + +1.1 810,118 - +0.9 810,175 + +0.6 810,176 - -0.5 810,192 - RR42_RS03640 0.14 +0.7 810,192 - RR42_RS03640 0.14 -0.3 810,193 + RR42_RS03640 0.15 -0.8 810,193 + RR42_RS03640 0.15 -0.5 810,194 - RR42_RS03640 0.15 +1.1 810,206 - RR42_RS03640 0.19 +0.2 810,206 - RR42_RS03640 0.19 -0.5 810,632 + -0.3 810,632 + -0.4 810,632 + -0.4 810,633 - +0.1 810,633 - +2.1 810,633 - +0.2 810,650 + -0.4 810,650 + -0.5 810,650 + +2.3 810,753 + RR42_RS03645 0.39 -0.1 810,753 + RR42_RS03645 0.39 +0.4 810,753 + RR42_RS03645 0.39 +2.1 810,833 + RR42_RS03645 0.63 -0.1 810,834 - RR42_RS03645 0.64 -1.1 810,834 - RR42_RS03645 0.64 +3.1 810,835 + RR42_RS03645 0.64 -0.9 810,835 + RR42_RS03645 0.64 -0.3 810,836 - RR42_RS03645 0.64 -0.5 810,836 - RR42_RS03645 0.64 -2.1 810,836 - RR42_RS03645 0.64 -0.9 810,836 - RR42_RS03645 0.64 +1.1 810,842 + RR42_RS03645 0.66 -0.5 810,843 - RR42_RS03645 0.66 -0.0 810,950 - -1.1 811,055 + +0.3 811,056 - +3.6 811,071 + +1.1 811,072 - +0.3 811,072 - +0.0 811,072 - -1.3 811,072 - +2.5 811,286 + RR42_RS03650 0.84 -0.8 811,287 - RR42_RS03650 0.84 -0.1 811,287 - RR42_RS03650 0.84 -0.9 811,290 - RR42_RS03650 0.85 -0.5 811,292 + RR42_RS03650 0.86 +0.6 811,329 + -1.3 811,330 - -0.5 811,330 - +0.2 811,359 - +0.1 811,415 - -1.3 811,495 - +0.2 811,541 + -0.0 811,542 - -0.2 811,542 - +1.0 811,542 - +0.3 811,542 - +1.0 811,542 - -0.4 811,614 - RR42_RS03655 0.18 -0.3 811,620 + RR42_RS03655 0.19 +0.7 811,620 + RR42_RS03655 0.19 -0.5 811,620 + RR42_RS03655 0.19 +0.7 811,621 - RR42_RS03655 0.20 -1.1 811,621 - RR42_RS03655 0.20 +0.0 811,621 - RR42_RS03655 0.20 +1.0 811,799 + RR42_RS03655 0.67 +0.4 811,800 - RR42_RS03655 0.67 -1.4 811,823 + RR42_RS03655 0.74 +0.1 811,824 - RR42_RS03655 0.74 +1.7 811,989 + +2.7 811,990 - -0.4 812,094 + RR42_RS03660 0.42 +1.0 812,095 - RR42_RS03660 0.42 -2.0 812,105 + RR42_RS03660 0.46 +0.8 812,105 + RR42_RS03660 0.46 +0.5 812,105 + RR42_RS03660 0.46 -0.0 812,106 - RR42_RS03660 0.46 +1.7 812,106 - RR42_RS03660 0.46 +0.0 812,106 - RR42_RS03660 0.46 +1.0 812,106 - RR42_RS03660 0.46 +0.3 812,122 + RR42_RS03660 0.53 +0.9 812,123 - RR42_RS03660 0.53 -1.5 812,189 + RR42_RS03660 0.79 +1.9 812,301 + -0.0 812,322 - -0.2 812,327 + +0.5 812,328 - -2.1 812,328 - -0.3
Or see this region's nucleotide sequence