Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02955 and RR42_RS02960 overlap by 1 nucleotides RR42_RS02960 and RR42_RS02965 overlap by 1 nucleotides RR42_RS02965 and RR42_RS02970 are separated by 348 nucleotides RR42_RS02970 and RR42_RS02975 are separated by 10 nucleotides
RR42_RS02955: RR42_RS02955 - malonate decarboxylase subunit delta, at 656,850 to 657,164
_RS02955
RR42_RS02960: RR42_RS02960 - triphosphoribosyl-dephospho-CoA synthase, at 657,164 to 658,069
_RS02960
RR42_RS02965: RR42_RS02965 - malonate decarboxylase subunit alpha, at 658,069 to 659,727
_RS02965
RR42_RS02970: RR42_RS02970 - malonate carrier protein, at 660,076 to 660,486
_RS02970
RR42_RS02975: RR42_RS02975 - malonate transporter, at 660,497 to 661,273
_RS02975
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 657.165 kb on + strand at 657.568 kb on - strand, within RR42_RS02960 at 657.568 kb on - strand, within RR42_RS02960 at 657.670 kb on + strand, within RR42_RS02960 at 657.671 kb on - strand, within RR42_RS02960 at 658.053 kb on - strand at 658.100 kb on + strand at 658.319 kb on + strand, within RR42_RS02965 at 658.358 kb on - strand, within RR42_RS02965 at 658.370 kb on + strand, within RR42_RS02965 at 658.371 kb on - strand, within RR42_RS02965 at 658.371 kb on - strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.769 kb on + strand, within RR42_RS02965 at 658.770 kb on - strand, within RR42_RS02965 at 658.770 kb on - strand, within RR42_RS02965 at 658.869 kb on - strand, within RR42_RS02965 at 658.941 kb on + strand, within RR42_RS02965 at 658.985 kb on + strand, within RR42_RS02965 at 659.240 kb on + strand, within RR42_RS02965 at 659.306 kb on + strand, within RR42_RS02965 at 659.307 kb on - strand, within RR42_RS02965 at 659.330 kb on + strand, within RR42_RS02965 at 659.330 kb on + strand, within RR42_RS02965 at 659.330 kb on + strand, within RR42_RS02965 at 659.330 kb on + strand, within RR42_RS02965 at 659.331 kb on - strand, within RR42_RS02965 at 659.331 kb on - strand, within RR42_RS02965 at 659.815 kb on - strand at 659.825 kb on + strand at 659.826 kb on - strand at 659.880 kb on - strand at 659.919 kb on + strand at 659.948 kb on + strand at 659.949 kb on - strand at 660.005 kb on + strand at 660.006 kb on - strand at 660.006 kb on - strand at 660.026 kb on - strand at 660.085 kb on + strand at 660.085 kb on + strand at 660.086 kb on - strand at 660.287 kb on - strand, within RR42_RS02970 at 660.671 kb on + strand, within RR42_RS02975 at 660.671 kb on + strand, within RR42_RS02975 at 660.675 kb on - strand, within RR42_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 657,165 + -1.1 657,568 - RR42_RS02960 0.45 +0.3 657,568 - RR42_RS02960 0.45 +0.4 657,670 + RR42_RS02960 0.56 +0.5 657,671 - RR42_RS02960 0.56 -0.7 658,053 - -0.0 658,100 + -1.4 658,319 + RR42_RS02965 0.15 +1.2 658,358 - RR42_RS02965 0.17 +0.8 658,370 + RR42_RS02965 0.18 +0.2 658,371 - RR42_RS02965 0.18 +0.2 658,371 - RR42_RS02965 0.18 -0.6 658,769 + RR42_RS02965 0.42 -0.7 658,769 + RR42_RS02965 0.42 +2.1 658,769 + RR42_RS02965 0.42 -1.2 658,770 - RR42_RS02965 0.42 +1.3 658,770 - RR42_RS02965 0.42 -0.2 658,869 - RR42_RS02965 0.48 +1.0 658,941 + RR42_RS02965 0.53 -0.6 658,985 + RR42_RS02965 0.55 +2.1 659,240 + RR42_RS02965 0.71 +1.4 659,306 + RR42_RS02965 0.75 +3.7 659,307 - RR42_RS02965 0.75 +0.5 659,330 + RR42_RS02965 0.76 -0.9 659,330 + RR42_RS02965 0.76 -0.3 659,330 + RR42_RS02965 0.76 +0.1 659,330 + RR42_RS02965 0.76 +0.7 659,331 - RR42_RS02965 0.76 +0.0 659,331 - RR42_RS02965 0.76 +0.3 659,815 - -0.6 659,825 + -1.1 659,826 - +0.5 659,880 - -1.2 659,919 + -0.8 659,948 + +1.1 659,949 - -0.4 660,005 + +0.7 660,006 - +0.3 660,006 - -0.2 660,026 - -1.2 660,085 + -0.5 660,085 + +2.5 660,086 - -1.0 660,287 - RR42_RS02970 0.51 +1.2 660,671 + RR42_RS02975 0.22 -1.6 660,671 + RR42_RS02975 0.22 -2.2 660,675 - RR42_RS02975 0.23 +1.2
Or see this region's nucleotide sequence