Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02710 and RR42_RS02715 are separated by 132 nucleotides RR42_RS02715 and RR42_RS02720 are separated by 526 nucleotides
RR42_RS02710: RR42_RS02710 - glycerophosphodiester phosphodiesterase, at 603,735 to 604,868
_RS02710
RR42_RS02715: RR42_RS02715 - Holliday junction DNA helicase, at 605,001 to 605,546
_RS02715
RR42_RS02720: RR42_RS02720 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 606,073 to 607,647
_RS02720
Position (kb) 605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.036 kb on + strand, within RR42_RS02710 at 604.045 kb on - strand, within RR42_RS02710 at 604.081 kb on + strand, within RR42_RS02710 at 604.246 kb on + strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.309 kb on + strand, within RR42_RS02710 at 604.309 kb on + strand, within RR42_RS02710 at 604.423 kb on + strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.623 kb on + strand, within RR42_RS02710 at 604.623 kb on + strand, within RR42_RS02710 at 604.624 kb on - strand, within RR42_RS02710 at 604.955 kb on + strand at 604.955 kb on + strand at 604.955 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.588 kb on - strand at 605.588 kb on - strand at 605.588 kb on - strand at 605.602 kb on - strand at 605.608 kb on + strand at 605.609 kb on - strand at 605.614 kb on + strand at 605.615 kb on - strand at 605.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 604,036 + RR42_RS02710 0.27 +0.1 604,045 - RR42_RS02710 0.27 -1.2 604,081 + RR42_RS02710 0.31 +0.8 604,246 + RR42_RS02710 0.45 +0.3 604,247 - RR42_RS02710 0.45 +0.4 604,247 - RR42_RS02710 0.45 -0.1 604,247 - RR42_RS02710 0.45 +1.2 604,247 - RR42_RS02710 0.45 -0.2 604,309 + RR42_RS02710 0.51 +1.5 604,309 + RR42_RS02710 0.51 +0.3 604,423 + RR42_RS02710 0.61 +0.4 604,424 - RR42_RS02710 0.61 -1.1 604,424 - RR42_RS02710 0.61 -0.0 604,424 - RR42_RS02710 0.61 -0.2 604,623 + RR42_RS02710 0.78 +0.2 604,623 + RR42_RS02710 0.78 +0.3 604,624 - RR42_RS02710 0.78 -1.5 604,955 + -0.0 604,955 + +0.5 604,955 + +0.1 605,587 + +0.0 605,587 + +0.7 605,587 + +0.3 605,587 + -0.8 605,588 - -0.4 605,588 - +2.1 605,588 - -1.9 605,602 - +1.0 605,608 + -0.3 605,609 - +1.0 605,614 + -0.1 605,615 - +0.5 605,615 - -0.6
Or see this region's nucleotide sequence