Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01480

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01470 and RR42_RS01475 are separated by 224 nucleotidesRR42_RS01475 and RR42_RS01480 are separated by 1 nucleotidesRR42_RS01480 and RR42_RS01485 are separated by 43 nucleotidesRR42_RS01485 and RR42_RS01490 are separated by 42 nucleotides RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856 _RS01470 RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401 _RS01475 RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668 _RS01480 RR42_RS01485: RR42_RS01485 - phosphonate transporter, at 335,712 to 336,077 _RS01485 RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553 _RS01490 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 333.446 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.815 kb on + strandat 333.816 kb on - strandat 333.928 kb on - strandat 333.958 kb on + strandat 333.959 kb on - strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.097 kb on + strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.253 kb on + strand, within RR42_RS01475at 334.253 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.258 kb on + strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.450 kb on - strandat 334.674 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.232 kb on + strand, within RR42_RS01480at 335.232 kb on + strand, within RR42_RS01480at 335.233 kb on - strand, within RR42_RS01480at 335.307 kb on - strand, within RR42_RS01480at 335.434 kb on + strand, within RR42_RS01480at 335.435 kb on - strand, within RR42_RS01480at 335.435 kb on - strand, within RR42_RS01480at 335.436 kb on + strand, within RR42_RS01480at 335.437 kb on - strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.474 kb on + strand, within RR42_RS01480at 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.620 kb on + strandat 335.621 kb on - strandat 335.621 kb on - strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.622 kb on + strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.623 kb on - strandat 335.731 kb on + strandat 335.732 kb on - strandat 335.806 kb on + strand, within RR42_RS01485at 335.806 kb on + strand, within RR42_RS01485at 335.807 kb on - strand, within RR42_RS01485at 336.122 kb on - strandat 336.404 kb on + strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.405 kb on - strand, within RR42_RS01490at 336.606 kb on + strand, within RR42_RS01490at 336.606 kb on + strand, within RR42_RS01490at 336.607 kb on - strand, within RR42_RS01490at 336.607 kb on - strand, within RR42_RS01490

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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333,446 + RR42_RS01470 0.42 +0.2
333,630 + RR42_RS01470 0.68 +1.2
333,630 + RR42_RS01470 0.68 +2.1
333,630 + RR42_RS01470 0.68 +0.5
333,631 - RR42_RS01470 0.68 +0.1
333,631 - RR42_RS01470 0.68 +1.1
333,704 + RR42_RS01470 0.79 -1.8
333,704 + RR42_RS01470 0.79 -0.0
333,704 + RR42_RS01470 0.79 -0.2
333,704 + RR42_RS01470 0.79 +1.1
333,704 + RR42_RS01470 0.79 +0.8
333,705 - RR42_RS01470 0.79 +0.6
333,705 - RR42_RS01470 0.79 -2.1
333,705 - RR42_RS01470 0.79 -0.8
333,815 + -0.3
333,816 - +1.7
333,928 - -1.0
333,958 + +1.5
333,959 - +0.5
334,066 + +1.1
334,066 + -0.3
334,066 + -1.5
334,097 + +0.2
334,098 - -2.5
334,098 - +0.5
334,098 - +0.5
334,253 + RR42_RS01475 0.54 +1.3
334,253 - RR42_RS01475 0.54 +1.9
334,254 - RR42_RS01475 0.54 -0.1
334,254 - RR42_RS01475 0.54 -0.6
334,258 + RR42_RS01475 0.55 +0.2
334,259 - RR42_RS01475 0.55 +0.5
334,259 - RR42_RS01475 0.55 +0.4
334,291 + RR42_RS01475 0.65 +2.1
334,291 + RR42_RS01475 0.65 +0.1
334,291 + RR42_RS01475 0.65 +0.0
334,291 + RR42_RS01475 0.65 -0.4
334,291 + RR42_RS01475 0.65 +0.1
334,291 + RR42_RS01475 0.65 +1.1
334,292 - RR42_RS01475 0.66 -0.0
334,292 - RR42_RS01475 0.66 +0.3
334,292 - RR42_RS01475 0.66 -1.2
334,292 - RR42_RS01475 0.66 -0.6
334,292 - RR42_RS01475 0.66 -0.0
334,450 - +2.7
334,674 + RR42_RS01480 0.21 -0.5
335,042 + RR42_RS01480 0.50 +2.5
335,042 + RR42_RS01480 0.50 +0.4
335,042 + RR42_RS01480 0.50 -0.8
335,042 + RR42_RS01480 0.50 +0.3
335,042 + RR42_RS01480 0.50 +0.6
335,042 + RR42_RS01480 0.50 -0.7
335,042 + RR42_RS01480 0.50 +0.7
335,042 + RR42_RS01480 0.50 +0.1
335,043 - RR42_RS01480 0.51 +2.1
335,043 - RR42_RS01480 0.51 +1.5
335,043 - RR42_RS01480 0.51 -0.7
335,043 - RR42_RS01480 0.51 -0.2
335,232 + RR42_RS01480 0.65 -0.9
335,232 + RR42_RS01480 0.65 +1.2
335,233 - RR42_RS01480 0.66 -1.3
335,307 - RR42_RS01480 0.71 -1.7
335,434 + RR42_RS01480 0.81 +0.3
335,435 - RR42_RS01480 0.82 -0.6
335,435 - RR42_RS01480 0.82 +0.1
335,436 + RR42_RS01480 0.82 -0.2
335,437 - RR42_RS01480 0.82 -0.5
335,474 + RR42_RS01480 0.85 +1.1
335,474 + RR42_RS01480 0.85 -0.3
335,474 + RR42_RS01480 0.85 -2.0
335,474 + RR42_RS01480 0.85 -0.2
335,620 + -0.4
335,620 + +1.0
335,620 + +0.2
335,620 + +1.8
335,620 + -0.2
335,621 - -1.5
335,621 - -2.0
335,622 + -1.1
335,622 + -2.6
335,622 + -1.4
335,622 + -2.3
335,622 + +0.9
335,622 + -0.7
335,622 + +2.1
335,623 - -0.5
335,623 - +0.5
335,623 - -0.6
335,623 - -0.4
335,623 - +0.2
335,623 - -1.6
335,623 - -0.2
335,623 - +0.2
335,731 + -0.7
335,732 - +0.2
335,806 + RR42_RS01485 0.26 +0.2
335,806 + RR42_RS01485 0.26 -0.5
335,807 - RR42_RS01485 0.26 +0.2
336,122 - -0.5
336,404 + RR42_RS01490 0.20 -0.2
336,405 - RR42_RS01490 0.20 +1.1
336,405 - RR42_RS01490 0.20 +1.1
336,405 - RR42_RS01490 0.20 +0.0
336,606 + RR42_RS01490 0.34 +1.1
336,606 + RR42_RS01490 0.34 -0.1
336,607 - RR42_RS01490 0.34 +0.5
336,607 - RR42_RS01490 0.34 +2.6

Or see this region's nucleotide sequence