Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01465 and RR42_RS01470 are separated by 56 nucleotides RR42_RS01470 and RR42_RS01475 are separated by 224 nucleotides RR42_RS01475 and RR42_RS01480 are separated by 1 nucleotides
RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086
_RS01465
RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856
_RS01470
RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401
_RS01475
RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668
_RS01480
Position (kb) 334
335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.227 kb on + strand, within RR42_RS01470 at 333.228 kb on - strand, within RR42_RS01470 at 333.300 kb on + strand, within RR42_RS01470 at 333.301 kb on - strand, within RR42_RS01470 at 333.446 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.815 kb on + strand at 333.816 kb on - strand at 333.928 kb on - strand at 333.958 kb on + strand at 333.959 kb on - strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.097 kb on + strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.253 kb on + strand, within RR42_RS01475 at 334.253 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.258 kb on + strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.450 kb on - strand at 334.674 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.232 kb on + strand, within RR42_RS01480 at 335.232 kb on + strand, within RR42_RS01480 at 335.233 kb on - strand, within RR42_RS01480 at 335.307 kb on - strand, within RR42_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 333,227 + RR42_RS01470 0.12 +1.3 333,228 - RR42_RS01470 0.12 -0.5 333,300 + RR42_RS01470 0.22 -0.9 333,301 - RR42_RS01470 0.22 -1.9 333,446 + RR42_RS01470 0.42 +0.2 333,630 + RR42_RS01470 0.68 +1.2 333,630 + RR42_RS01470 0.68 +2.1 333,630 + RR42_RS01470 0.68 +0.5 333,631 - RR42_RS01470 0.68 +0.1 333,631 - RR42_RS01470 0.68 +1.1 333,704 + RR42_RS01470 0.79 -1.8 333,704 + RR42_RS01470 0.79 -0.0 333,704 + RR42_RS01470 0.79 -0.2 333,704 + RR42_RS01470 0.79 +1.1 333,704 + RR42_RS01470 0.79 +0.8 333,705 - RR42_RS01470 0.79 +0.6 333,705 - RR42_RS01470 0.79 -2.1 333,705 - RR42_RS01470 0.79 -0.8 333,815 + -0.3 333,816 - +1.7 333,928 - -1.0 333,958 + +1.5 333,959 - +0.5 334,066 + +1.1 334,066 + -0.3 334,066 + -1.5 334,097 + +0.2 334,098 - -2.5 334,098 - +0.5 334,098 - +0.5 334,253 + RR42_RS01475 0.54 +1.3 334,253 - RR42_RS01475 0.54 +1.9 334,254 - RR42_RS01475 0.54 -0.1 334,254 - RR42_RS01475 0.54 -0.6 334,258 + RR42_RS01475 0.55 +0.2 334,259 - RR42_RS01475 0.55 +0.5 334,259 - RR42_RS01475 0.55 +0.4 334,291 + RR42_RS01475 0.65 +2.1 334,291 + RR42_RS01475 0.65 +0.1 334,291 + RR42_RS01475 0.65 +0.0 334,291 + RR42_RS01475 0.65 -0.4 334,291 + RR42_RS01475 0.65 +0.1 334,291 + RR42_RS01475 0.65 +1.1 334,292 - RR42_RS01475 0.66 -0.0 334,292 - RR42_RS01475 0.66 +0.3 334,292 - RR42_RS01475 0.66 -1.2 334,292 - RR42_RS01475 0.66 -0.6 334,292 - RR42_RS01475 0.66 -0.0 334,450 - +2.7 334,674 + RR42_RS01480 0.21 -0.5 335,042 + RR42_RS01480 0.50 +2.5 335,042 + RR42_RS01480 0.50 +0.4 335,042 + RR42_RS01480 0.50 -0.8 335,042 + RR42_RS01480 0.50 +0.3 335,042 + RR42_RS01480 0.50 +0.6 335,042 + RR42_RS01480 0.50 -0.7 335,042 + RR42_RS01480 0.50 +0.7 335,042 + RR42_RS01480 0.50 +0.1 335,043 - RR42_RS01480 0.51 +2.1 335,043 - RR42_RS01480 0.51 +1.5 335,043 - RR42_RS01480 0.51 -0.7 335,043 - RR42_RS01480 0.51 -0.2 335,232 + RR42_RS01480 0.65 -0.9 335,232 + RR42_RS01480 0.65 +1.2 335,233 - RR42_RS01480 0.66 -1.3 335,307 - RR42_RS01480 0.71 -1.7
Or see this region's nucleotide sequence