Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00325 and RR42_RS00330 are separated by 78 nucleotides RR42_RS00330 and RR42_RS00335 are separated by 95 nucleotides RR42_RS00335 and RR42_RS00340 are separated by 21 nucleotides RR42_RS00340 and RR42_RS00345 are separated by 152 nucleotides
RR42_RS00325: RR42_RS00325 - MFS transporter, at 90,910 to 92,400
_RS00325
RR42_RS00330: RR42_RS00330 - glutathione peroxidase, at 92,479 to 93,117
_RS00330
RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004
_RS00335
RR42_RS00340: RR42_RS00340 - glutathione S-transferase, at 94,026 to 94,652
_RS00340
RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716
_RS00345
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.425 kb on + strand at 92.426 kb on - strand at 92.426 kb on - strand at 92.449 kb on + strand at 92.449 kb on + strand at 92.730 kb on + strand, within RR42_RS00330 at 92.740 kb on + strand, within RR42_RS00330 at 92.740 kb on + strand, within RR42_RS00330 at 92.740 kb on + strand, within RR42_RS00330 at 92.740 kb on + strand, within RR42_RS00330 at 92.741 kb on - strand, within RR42_RS00330 at 92.741 kb on - strand, within RR42_RS00330 at 92.761 kb on + strand, within RR42_RS00330 at 92.761 kb on + strand, within RR42_RS00330 at 92.762 kb on - strand at 92.783 kb on - strand, within RR42_RS00330 at 92.791 kb on + strand, within RR42_RS00330 at 92.792 kb on - strand, within RR42_RS00330 at 92.792 kb on - strand, within RR42_RS00330 at 92.881 kb on + strand, within RR42_RS00330 at 92.881 kb on + strand, within RR42_RS00330 at 92.882 kb on - strand, within RR42_RS00330 at 92.890 kb on + strand, within RR42_RS00330 at 92.890 kb on + strand, within RR42_RS00330 at 92.890 kb on + strand, within RR42_RS00330 at 92.890 kb on + strand, within RR42_RS00330 at 92.891 kb on - strand, within RR42_RS00330 at 92.891 kb on - strand, within RR42_RS00330 at 92.891 kb on - strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.953 kb on + strand, within RR42_RS00330 at 92.954 kb on - strand, within RR42_RS00330 at 92.954 kb on - strand, within RR42_RS00330 at 92.954 kb on - strand, within RR42_RS00330 at 93.001 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.007 kb on + strand, within RR42_RS00330 at 93.008 kb on - strand, within RR42_RS00330 at 93.008 kb on - strand, within RR42_RS00330 at 93.008 kb on - strand, within RR42_RS00330 at 93.008 kb on - strand, within RR42_RS00330 at 93.008 kb on - strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.046 kb on - strand, within RR42_RS00330 at 93.046 kb on - strand, within RR42_RS00330 at 93.116 kb on - strand at 93.183 kb on + strand at 93.184 kb on - strand at 93.226 kb on + strand at 93.226 kb on + strand at 93.228 kb on + strand at 93.229 kb on - strand at 93.229 kb on - strand at 93.366 kb on + strand, within RR42_RS00335 at 93.367 kb on - strand, within RR42_RS00335 at 93.367 kb on - strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.396 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.450 kb on - strand, within RR42_RS00335 at 93.569 kb on + strand, within RR42_RS00335 at 93.570 kb on - strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.667 kb on - strand, within RR42_RS00335 at 93.795 kb on + strand, within RR42_RS00335 at 93.795 kb on + strand, within RR42_RS00335 at 93.796 kb on - strand, within RR42_RS00335 at 93.796 kb on - strand, within RR42_RS00335 at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.970 kb on - strand at 93.970 kb on - strand at 93.970 kb on - strand at 94.114 kb on + strand, within RR42_RS00340 at 94.115 kb on - strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.205 kb on - strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.504 kb on - strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.639 kb on + strand at 94.639 kb on + strand at 94.639 kb on + strand at 94.640 kb on - strand at 94.642 kb on + strand at 94.643 kb on - strand at 94.735 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.818 kb on - strand at 94.985 kb on + strand, within RR42_RS00345 at 94.986 kb on - strand, within RR42_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 92,425 + +0.9 92,426 - +0.1 92,426 - +0.3 92,449 + +1.8 92,449 + +0.5 92,730 + RR42_RS00330 0.39 -1.3 92,740 + RR42_RS00330 0.41 +0.2 92,740 + RR42_RS00330 0.41 -0.3 92,740 + RR42_RS00330 0.41 +0.6 92,740 + RR42_RS00330 0.41 -0.3 92,741 - RR42_RS00330 0.41 +0.8 92,741 - RR42_RS00330 0.41 +0.4 92,761 + RR42_RS00330 0.44 +1.1 92,761 + RR42_RS00330 0.44 +0.5 92,762 - -0.7 92,783 - RR42_RS00330 0.48 -0.7 92,791 + RR42_RS00330 0.49 +0.7 92,792 - RR42_RS00330 0.49 +0.2 92,792 - RR42_RS00330 0.49 -2.3 92,881 + RR42_RS00330 0.63 -3.4 92,881 + RR42_RS00330 0.63 -0.7 92,882 - RR42_RS00330 0.63 +0.9 92,890 + RR42_RS00330 0.64 -0.6 92,890 + RR42_RS00330 0.64 -0.0 92,890 + RR42_RS00330 0.64 +0.9 92,890 + RR42_RS00330 0.64 +0.2 92,891 - RR42_RS00330 0.64 +0.8 92,891 - RR42_RS00330 0.64 +1.4 92,891 - RR42_RS00330 0.64 +0.2 92,953 + RR42_RS00330 0.74 -2.2 92,953 + RR42_RS00330 0.74 +1.1 92,953 + RR42_RS00330 0.74 -0.3 92,953 + RR42_RS00330 0.74 -1.4 92,953 + RR42_RS00330 0.74 -0.9 92,953 + RR42_RS00330 0.74 -0.2 92,954 - RR42_RS00330 0.74 -0.3 92,954 - RR42_RS00330 0.74 -1.1 92,954 - RR42_RS00330 0.74 -1.1 93,001 + RR42_RS00330 0.82 +0.8 93,007 + RR42_RS00330 0.83 -3.1 93,007 + RR42_RS00330 0.83 +0.4 93,007 + RR42_RS00330 0.83 -2.2 93,007 + RR42_RS00330 0.83 +0.8 93,007 + RR42_RS00330 0.83 -1.0 93,007 + RR42_RS00330 0.83 -1.2 93,007 + RR42_RS00330 0.83 -0.1 93,007 + RR42_RS00330 0.83 -0.8 93,008 - RR42_RS00330 0.83 -0.7 93,008 - RR42_RS00330 0.83 +0.6 93,008 - RR42_RS00330 0.83 -0.3 93,008 - RR42_RS00330 0.83 -0.2 93,008 - RR42_RS00330 0.83 -1.3 93,043 + RR42_RS00330 0.88 +0.2 93,043 + RR42_RS00330 0.88 -0.1 93,043 + RR42_RS00330 0.88 +0.3 93,043 + RR42_RS00330 0.88 +0.4 93,044 - RR42_RS00330 0.88 +0.4 93,044 - RR42_RS00330 0.88 -0.4 93,044 - RR42_RS00330 0.88 +0.1 93,046 - RR42_RS00330 0.89 +0.8 93,046 - RR42_RS00330 0.89 +0.4 93,116 - +0.9 93,183 + -1.0 93,184 - +0.5 93,226 + +0.5 93,226 + -0.1 93,228 + -0.3 93,229 - +0.3 93,229 - +0.2 93,366 + RR42_RS00335 0.19 +2.4 93,367 - RR42_RS00335 0.19 -0.1 93,367 - RR42_RS00335 0.19 +0.6 93,378 + RR42_RS00335 0.21 +1.1 93,378 + RR42_RS00335 0.21 -0.6 93,378 + RR42_RS00335 0.21 +0.3 93,378 + RR42_RS00335 0.21 -0.3 93,379 - RR42_RS00335 0.21 -0.0 93,379 - RR42_RS00335 0.21 -1.0 93,379 - RR42_RS00335 0.21 +1.0 93,396 + RR42_RS00335 0.23 +0.3 93,420 + RR42_RS00335 0.26 +0.4 93,420 + RR42_RS00335 0.26 -0.7 93,420 + RR42_RS00335 0.26 -0.2 93,420 + RR42_RS00335 0.26 -0.3 93,420 + RR42_RS00335 0.26 -1.1 93,421 - RR42_RS00335 0.26 -0.1 93,421 - RR42_RS00335 0.26 +1.6 93,421 - RR42_RS00335 0.26 -0.4 93,421 - RR42_RS00335 0.26 -0.7 93,421 - RR42_RS00335 0.26 +1.1 93,450 - RR42_RS00335 0.30 +0.5 93,569 + RR42_RS00335 0.45 +0.1 93,570 - RR42_RS00335 0.45 +1.3 93,666 + RR42_RS00335 0.57 +0.7 93,666 + RR42_RS00335 0.57 +0.6 93,666 + RR42_RS00335 0.57 +0.5 93,666 + RR42_RS00335 0.57 -0.2 93,667 - RR42_RS00335 0.57 -0.4 93,795 + RR42_RS00335 0.73 +0.8 93,795 + RR42_RS00335 0.73 -1.3 93,796 - RR42_RS00335 0.74 +0.4 93,796 - RR42_RS00335 0.74 -2.0 93,969 + +0.1 93,969 + +0.3 93,969 + -0.4 93,969 + +1.1 93,969 + -0.7 93,969 + +1.1 93,969 + +0.5 93,970 - +0.9 93,970 - -2.4 93,970 - +0.3 94,114 + RR42_RS00340 0.14 +1.5 94,115 - RR42_RS00340 0.14 -1.1 94,168 + RR42_RS00340 0.23 -2.2 94,168 + RR42_RS00340 0.23 +0.8 94,204 + RR42_RS00340 0.28 -0.8 94,204 + RR42_RS00340 0.28 +0.6 94,204 + RR42_RS00340 0.28 +0.1 94,205 - RR42_RS00340 0.29 -0.2 94,426 + RR42_RS00340 0.64 +0.6 94,426 + RR42_RS00340 0.64 -1.1 94,426 + RR42_RS00340 0.64 -0.5 94,426 + RR42_RS00340 0.64 -0.1 94,426 + RR42_RS00340 0.64 +0.3 94,427 - RR42_RS00340 0.64 -2.4 94,427 - RR42_RS00340 0.64 +1.2 94,504 - RR42_RS00340 0.76 +1.1 94,510 + RR42_RS00340 0.77 +0.5 94,510 + RR42_RS00340 0.77 +0.8 94,510 + RR42_RS00340 0.77 -0.5 94,511 - RR42_RS00340 0.77 -0.8 94,511 - RR42_RS00340 0.77 -0.9 94,639 + +0.1 94,639 + -0.9 94,639 + -0.9 94,640 - -0.9 94,642 + -0.2 94,643 - +1.4 94,735 - -0.8 94,812 + -0.7 94,813 - +0.6 94,818 - +0.5 94,985 + RR42_RS00345 0.20 +0.9 94,986 - RR42_RS00345 0.20 +0.1
Or see this region's nucleotide sequence