Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4892 and Psyr_4893 are separated by 56 nucleotides Psyr_4893 and Psyr_4894 are separated by 19 nucleotides Psyr_4894 and Psyr_4895 are separated by 106 nucleotides
Psyr_4892: Psyr_4892 - trypsin domain protein, at 5,804,227 to 5,805,762
_4892
Psyr_4893: Psyr_4893 - imidazole glycerol phosphate synthase subunit hisF, at 5,805,819 to 5,806,589
_4893
Psyr_4894: Psyr_4894 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 5,806,609 to 5,807,346
_4894
Psyr_4895: Psyr_4895 - conserved hypothetical protein, at 5,807,453 to 5,807,731
_4895
Position (kb) 5805
5806
5807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5804.820 kb on - strand, within Psyr_4892 at 5804.909 kb on + strand, within Psyr_4892 at 5804.910 kb on - strand, within Psyr_4892 at 5804.917 kb on + strand, within Psyr_4892 at 5804.919 kb on + strand, within Psyr_4892 at 5804.920 kb on - strand, within Psyr_4892 at 5804.920 kb on - strand, within Psyr_4892 at 5804.920 kb on - strand, within Psyr_4892 at 5804.920 kb on - strand, within Psyr_4892 at 5804.920 kb on - strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.043 kb on + strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.044 kb on - strand, within Psyr_4892 at 5805.120 kb on - strand, within Psyr_4892 at 5805.120 kb on - strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.169 kb on + strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.170 kb on - strand, within Psyr_4892 at 5805.240 kb on + strand, within Psyr_4892 at 5805.241 kb on - strand, within Psyr_4892 at 5805.241 kb on - strand, within Psyr_4892 at 5805.241 kb on - strand, within Psyr_4892 at 5805.241 kb on - strand, within Psyr_4892 at 5805.271 kb on - strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.303 kb on + strand, within Psyr_4892 at 5805.304 kb on - strand, within Psyr_4892 at 5805.304 kb on - strand, within Psyr_4892 at 5805.304 kb on - strand, within Psyr_4892 at 5805.333 kb on + strand, within Psyr_4892 at 5805.333 kb on + strand, within Psyr_4892 at 5805.333 kb on + strand, within Psyr_4892 at 5805.334 kb on - strand, within Psyr_4892 at 5805.367 kb on + strand, within Psyr_4892 at 5805.397 kb on - strand, within Psyr_4892 at 5805.397 kb on - strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.485 kb on + strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.486 kb on - strand, within Psyr_4892 at 5805.522 kb on - strand, within Psyr_4892 at 5805.522 kb on - strand, within Psyr_4892 at 5805.611 kb on - strand at 5805.623 kb on - strand at 5805.623 kb on - strand at 5805.623 kb on - strand at 5805.625 kb on + strand at 5805.625 kb on + strand at 5805.625 kb on + strand at 5805.625 kb on + strand at 5805.625 kb on + strand at 5805.626 kb on - strand at 5805.626 kb on - strand at 5805.626 kb on - strand at 5805.723 kb on - strand at 5805.765 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.850 kb on + strand at 5805.851 kb on - strand at 5805.851 kb on - strand at 5805.851 kb on - strand at 5805.851 kb on - strand at 5805.874 kb on + strand at 5805.875 kb on - strand at 5805.893 kb on + strand at 5806.394 kb on + strand, within Psyr_4893 at 5806.394 kb on + strand, within Psyr_4893 at 5806.667 kb on + strand at 5806.667 kb on + strand at 5806.667 kb on + strand at 5806.668 kb on - strand at 5806.851 kb on - strand, within Psyr_4894 at 5806.851 kb on - strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.350 kb on + strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.454 kb on + strand at 5807.454 kb on + strand at 5807.455 kb on - strand at 5807.455 kb on - strand at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.542 kb on - strand, within Psyr_4895 at 5807.544 kb on + strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 5,804,820 - Psyr_4892 0.39 +1.8 5,804,909 + Psyr_4892 0.44 -0.4 5,804,910 - Psyr_4892 0.44 +0.7 5,804,917 + Psyr_4892 0.45 -0.3 5,804,919 + Psyr_4892 0.45 -0.1 5,804,920 - Psyr_4892 0.45 -0.4 5,804,920 - Psyr_4892 0.45 -0.0 5,804,920 - Psyr_4892 0.45 +0.6 5,804,920 - Psyr_4892 0.45 +0.8 5,804,920 - Psyr_4892 0.45 -0.3 5,805,043 + Psyr_4892 0.53 -2.8 5,805,043 + Psyr_4892 0.53 +0.7 5,805,043 + Psyr_4892 0.53 +0.3 5,805,043 + Psyr_4892 0.53 -0.6 5,805,043 + Psyr_4892 0.53 -0.6 5,805,043 + Psyr_4892 0.53 +0.3 5,805,043 + Psyr_4892 0.53 +0.0 5,805,044 - Psyr_4892 0.53 +0.7 5,805,044 - Psyr_4892 0.53 +0.4 5,805,044 - Psyr_4892 0.53 +0.2 5,805,044 - Psyr_4892 0.53 +0.3 5,805,044 - Psyr_4892 0.53 -1.0 5,805,044 - Psyr_4892 0.53 -1.7 5,805,044 - Psyr_4892 0.53 +2.0 5,805,044 - Psyr_4892 0.53 +0.4 5,805,044 - Psyr_4892 0.53 +0.6 5,805,044 - Psyr_4892 0.53 -0.6 5,805,120 - Psyr_4892 0.58 -1.0 5,805,120 - Psyr_4892 0.58 -1.0 5,805,169 + Psyr_4892 0.61 +0.3 5,805,169 + Psyr_4892 0.61 +2.5 5,805,169 + Psyr_4892 0.61 +0.1 5,805,169 + Psyr_4892 0.61 +0.1 5,805,169 + Psyr_4892 0.61 +0.5 5,805,169 + Psyr_4892 0.61 +0.5 5,805,169 + Psyr_4892 0.61 -0.0 5,805,169 + Psyr_4892 0.61 -1.1 5,805,169 + Psyr_4892 0.61 -1.3 5,805,170 - Psyr_4892 0.61 +1.1 5,805,170 - Psyr_4892 0.61 +0.1 5,805,170 - Psyr_4892 0.61 -0.0 5,805,170 - Psyr_4892 0.61 +1.3 5,805,170 - Psyr_4892 0.61 -1.6 5,805,170 - Psyr_4892 0.61 +1.0 5,805,170 - Psyr_4892 0.61 -1.2 5,805,170 - Psyr_4892 0.61 -0.2 5,805,170 - Psyr_4892 0.61 +0.1 5,805,170 - Psyr_4892 0.61 +1.9 5,805,240 + Psyr_4892 0.66 -0.3 5,805,241 - Psyr_4892 0.66 +0.1 5,805,241 - Psyr_4892 0.66 +0.5 5,805,241 - Psyr_4892 0.66 -1.3 5,805,241 - Psyr_4892 0.66 +1.7 5,805,271 - Psyr_4892 0.68 -0.5 5,805,303 + Psyr_4892 0.70 +0.4 5,805,303 + Psyr_4892 0.70 -0.8 5,805,303 + Psyr_4892 0.70 +0.6 5,805,303 + Psyr_4892 0.70 -1.1 5,805,303 + Psyr_4892 0.70 +1.0 5,805,303 + Psyr_4892 0.70 -0.1 5,805,304 - Psyr_4892 0.70 -1.0 5,805,304 - Psyr_4892 0.70 +0.8 5,805,304 - Psyr_4892 0.70 -0.4 5,805,333 + Psyr_4892 0.72 +0.6 5,805,333 + Psyr_4892 0.72 -0.5 5,805,333 + Psyr_4892 0.72 +0.6 5,805,334 - Psyr_4892 0.72 -0.3 5,805,367 + Psyr_4892 0.74 +0.3 5,805,397 - Psyr_4892 0.76 +0.2 5,805,397 - Psyr_4892 0.76 -0.6 5,805,485 + Psyr_4892 0.82 +0.3 5,805,485 + Psyr_4892 0.82 -0.8 5,805,485 + Psyr_4892 0.82 +0.6 5,805,485 + Psyr_4892 0.82 +0.8 5,805,485 + Psyr_4892 0.82 +1.2 5,805,485 + Psyr_4892 0.82 -0.7 5,805,485 + Psyr_4892 0.82 -0.0 5,805,486 - Psyr_4892 0.82 +0.7 5,805,486 - Psyr_4892 0.82 +2.3 5,805,486 - Psyr_4892 0.82 -0.2 5,805,486 - Psyr_4892 0.82 +1.8 5,805,486 - Psyr_4892 0.82 +1.1 5,805,486 - Psyr_4892 0.82 +0.5 5,805,486 - Psyr_4892 0.82 -1.1 5,805,486 - Psyr_4892 0.82 +0.1 5,805,522 - Psyr_4892 0.84 -1.0 5,805,522 - Psyr_4892 0.84 -0.3 5,805,611 - +0.4 5,805,623 - -1.0 5,805,623 - +0.6 5,805,623 - +1.3 5,805,625 + +0.3 5,805,625 + -0.1 5,805,625 + -0.5 5,805,625 + +0.6 5,805,625 + +0.2 5,805,626 - -0.3 5,805,626 - -0.7 5,805,626 - +1.0 5,805,723 - +0.1 5,805,765 + +0.6 5,805,850 + -0.0 5,805,850 + -0.7 5,805,850 + -0.8 5,805,850 + -2.3 5,805,850 + -0.0 5,805,850 + +0.1 5,805,850 + +0.6 5,805,851 - -0.4 5,805,851 - -0.0 5,805,851 - +1.1 5,805,851 - -1.6 5,805,874 + +0.6 5,805,875 - -0.7 5,805,893 + +0.8 5,806,394 + Psyr_4893 0.75 -0.4 5,806,394 + Psyr_4893 0.75 -1.0 5,806,667 + +0.6 5,806,667 + -1.0 5,806,667 + +0.3 5,806,668 - -0.3 5,806,851 - Psyr_4894 0.33 +0.7 5,806,851 - Psyr_4894 0.33 +0.4 5,807,048 + Psyr_4894 0.59 -0.3 5,807,048 + Psyr_4894 0.59 -1.0 5,807,048 + Psyr_4894 0.59 -0.0 5,807,049 - Psyr_4894 0.60 -1.0 5,807,049 - Psyr_4894 0.60 -1.7 5,807,049 - Psyr_4894 0.60 +1.3 5,807,049 - Psyr_4894 0.60 +0.4 5,807,049 - Psyr_4894 0.60 -1.7 5,807,049 - Psyr_4894 0.60 -1.4 5,807,069 + Psyr_4894 0.62 +0.1 5,807,069 + Psyr_4894 0.62 +0.7 5,807,069 + Psyr_4894 0.62 +1.7 5,807,069 + Psyr_4894 0.62 -0.5 5,807,070 - Psyr_4894 0.62 +1.3 5,807,070 - Psyr_4894 0.62 +0.3 5,807,070 - Psyr_4894 0.62 +0.2 5,807,070 - Psyr_4894 0.62 -1.6 5,807,350 + +0.7 5,807,351 - -0.0 5,807,351 - -0.9 5,807,351 - +0.6 5,807,351 - -0.1 5,807,398 + -1.3 5,807,398 + +1.3 5,807,398 + +1.1 5,807,398 + -0.5 5,807,398 + -0.7 5,807,399 - -0.6 5,807,399 - +0.5 5,807,399 - +0.5 5,807,399 - -0.9 5,807,399 - +0.4 5,807,404 + +0.9 5,807,404 + +0.6 5,807,404 + -0.2 5,807,451 - +0.4 5,807,451 - -0.0 5,807,451 - -0.6 5,807,451 - +0.2 5,807,454 + +0.9 5,807,454 + +0.4 5,807,455 - +1.0 5,807,455 - +2.0 5,807,541 + Psyr_4895 0.32 -1.6 5,807,541 + Psyr_4895 0.32 -0.2 5,807,541 + Psyr_4895 0.32 +0.7 5,807,542 - Psyr_4895 0.32 -0.6 5,807,544 + Psyr_4895 0.33 +0.7 5,807,545 - Psyr_4895 0.33 -0.3 5,807,545 - Psyr_4895 0.33 +0.6
Or see this region's nucleotide sequence