Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4838

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4837 and Psyr_4838 are separated by 86 nucleotidesPsyr_4838 and Psyr_4839 overlap by 13 nucleotides Psyr_4837: Psyr_4837 - Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 5,741,370 to 5,743,628 _4837 Psyr_4838: Psyr_4838 - transcriptional regulator, MerR family, at 5,743,715 to 5,744,161 _4838 Psyr_4839: Psyr_4839 - hypothetical protein, at 5,744,149 to 5,745,078 _4839 Position (kb) 5743 5744 5745Strain fitness (log2 ratio) -2 -1 0 1 2at 5742.753 kb on - strand, within Psyr_4837at 5742.959 kb on + strand, within Psyr_4837at 5742.960 kb on - strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.084 kb on + strand, within Psyr_4837at 5743.085 kb on - strand, within Psyr_4837at 5743.085 kb on - strand, within Psyr_4837at 5743.085 kb on - strand, within Psyr_4837at 5743.684 kb on - strandat 5743.773 kb on - strand, within Psyr_4838at 5743.773 kb on - strand, within Psyr_4838at 5743.829 kb on + strand, within Psyr_4838at 5743.829 kb on + strand, within Psyr_4838at 5743.830 kb on - strand, within Psyr_4838at 5744.343 kb on + strand, within Psyr_4839at 5744.365 kb on - strand, within Psyr_4839at 5744.379 kb on + strand, within Psyr_4839at 5744.379 kb on + strand, within Psyr_4839at 5744.379 kb on + strand, within Psyr_4839at 5744.380 kb on - strand, within Psyr_4839at 5744.380 kb on - strand, within Psyr_4839at 5744.380 kb on - strand, within Psyr_4839at 5744.402 kb on + strand, within Psyr_4839at 5744.403 kb on - strand, within Psyr_4839at 5744.403 kb on - strand, within Psyr_4839at 5744.403 kb on - strand, within Psyr_4839at 5744.403 kb on - strand, within Psyr_4839at 5744.403 kb on - strand, within Psyr_4839at 5744.510 kb on + strand, within Psyr_4839at 5744.510 kb on + strand, within Psyr_4839at 5744.511 kb on - strand, within Psyr_4839at 5744.511 kb on - strand, within Psyr_4839at 5744.511 kb on - strand, within Psyr_4839at 5744.519 kb on + strand, within Psyr_4839at 5744.519 kb on + strand, within Psyr_4839at 5744.519 kb on + strand, within Psyr_4839at 5744.519 kb on + strand, within Psyr_4839at 5744.520 kb on - strand, within Psyr_4839at 5744.593 kb on - strand, within Psyr_4839at 5744.606 kb on - strand, within Psyr_4839at 5744.625 kb on - strand, within Psyr_4839at 5744.646 kb on + strand, within Psyr_4839at 5744.683 kb on - strand, within Psyr_4839at 5744.717 kb on - strand, within Psyr_4839at 5744.717 kb on - strand, within Psyr_4839at 5744.720 kb on - strand, within Psyr_4839at 5744.720 kb on - strand, within Psyr_4839at 5744.797 kb on + strand, within Psyr_4839at 5744.798 kb on - strand, within Psyr_4839at 5744.798 kb on - strand, within Psyr_4839at 5744.798 kb on - strand, within Psyr_4839at 5744.945 kb on + strand, within Psyr_4839at 5744.945 kb on + strand, within Psyr_4839at 5744.945 kb on + strand, within Psyr_4839at 5744.945 kb on + strand, within Psyr_4839at 5744.945 kb on + strand, within Psyr_4839at 5744.946 kb on - strand, within Psyr_4839at 5744.946 kb on - strand, within Psyr_4839at 5744.946 kb on - strand, within Psyr_4839at 5744.946 kb on - strand, within Psyr_4839at 5744.949 kb on + strand, within Psyr_4839at 5744.950 kb on - strand, within Psyr_4839at 5744.950 kb on - strand, within Psyr_4839at 5744.950 kb on - strand, within Psyr_4839at 5744.972 kb on + strand, within Psyr_4839at 5744.972 kb on + strand, within Psyr_4839at 5744.973 kb on - strand, within Psyr_4839at 5744.973 kb on - strand, within Psyr_4839at 5744.973 kb on - strand, within Psyr_4839at 5745.009 kb on - strandat 5745.068 kb on - strandat 5745.080 kb on + strandat 5745.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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5,742,753 - Psyr_4837 0.61 -2.3
5,742,959 + Psyr_4837 0.70 -1.2
5,742,960 - Psyr_4837 0.70 +0.7
5,743,084 + Psyr_4837 0.76 -1.1
5,743,084 + Psyr_4837 0.76 -0.3
5,743,084 + Psyr_4837 0.76 -0.2
5,743,084 + Psyr_4837 0.76 +1.2
5,743,084 + Psyr_4837 0.76 +0.3
5,743,084 + Psyr_4837 0.76 -1.0
5,743,084 + Psyr_4837 0.76 +0.0
5,743,084 + Psyr_4837 0.76 +0.5
5,743,084 + Psyr_4837 0.76 -1.7
5,743,084 + Psyr_4837 0.76 +0.5
5,743,084 + Psyr_4837 0.76 +0.2
5,743,084 + Psyr_4837 0.76 -1.3
5,743,085 - Psyr_4837 0.76 -0.5
5,743,085 - Psyr_4837 0.76 -0.3
5,743,085 - Psyr_4837 0.76 +0.8
5,743,684 - -0.0
5,743,773 - Psyr_4838 0.13 -1.3
5,743,773 - Psyr_4838 0.13 -0.1
5,743,829 + Psyr_4838 0.26 +0.6
5,743,829 + Psyr_4838 0.26 -1.1
5,743,830 - Psyr_4838 0.26 -0.8
5,744,343 + Psyr_4839 0.21 +0.1
5,744,365 - Psyr_4839 0.23 +1.4
5,744,379 + Psyr_4839 0.25 +0.5
5,744,379 + Psyr_4839 0.25 -0.3
5,744,379 + Psyr_4839 0.25 +0.7
5,744,380 - Psyr_4839 0.25 +0.0
5,744,380 - Psyr_4839 0.25 +0.3
5,744,380 - Psyr_4839 0.25 +1.0
5,744,402 + Psyr_4839 0.27 +0.1
5,744,403 - Psyr_4839 0.27 +2.0
5,744,403 - Psyr_4839 0.27 +0.4
5,744,403 - Psyr_4839 0.27 -0.3
5,744,403 - Psyr_4839 0.27 +0.8
5,744,403 - Psyr_4839 0.27 +1.4
5,744,510 + Psyr_4839 0.39 +0.5
5,744,510 + Psyr_4839 0.39 +1.0
5,744,511 - Psyr_4839 0.39 -0.1
5,744,511 - Psyr_4839 0.39 -1.1
5,744,511 - Psyr_4839 0.39 -0.1
5,744,519 + Psyr_4839 0.40 +0.7
5,744,519 + Psyr_4839 0.40 -0.8
5,744,519 + Psyr_4839 0.40 -1.0
5,744,519 + Psyr_4839 0.40 -0.8
5,744,520 - Psyr_4839 0.40 +0.8
5,744,593 - Psyr_4839 0.48 +0.4
5,744,606 - Psyr_4839 0.49 +0.6
5,744,625 - Psyr_4839 0.51 -0.1
5,744,646 + Psyr_4839 0.53 -0.7
5,744,683 - Psyr_4839 0.57 +1.0
5,744,717 - Psyr_4839 0.61 +0.6
5,744,717 - Psyr_4839 0.61 -0.8
5,744,720 - Psyr_4839 0.61 -0.4
5,744,720 - Psyr_4839 0.61 -1.5
5,744,797 + Psyr_4839 0.70 -0.7
5,744,798 - Psyr_4839 0.70 -0.9
5,744,798 - Psyr_4839 0.70 +0.8
5,744,798 - Psyr_4839 0.70 -0.1
5,744,945 + Psyr_4839 0.86 +0.1
5,744,945 + Psyr_4839 0.86 +0.4
5,744,945 + Psyr_4839 0.86 +1.0
5,744,945 + Psyr_4839 0.86 +0.4
5,744,945 + Psyr_4839 0.86 -0.7
5,744,946 - Psyr_4839 0.86 -1.2
5,744,946 - Psyr_4839 0.86 -0.3
5,744,946 - Psyr_4839 0.86 +1.4
5,744,946 - Psyr_4839 0.86 -0.4
5,744,949 + Psyr_4839 0.86 +0.3
5,744,950 - Psyr_4839 0.86 +0.5
5,744,950 - Psyr_4839 0.86 +0.2
5,744,950 - Psyr_4839 0.86 -0.5
5,744,972 + Psyr_4839 0.88 +0.0
5,744,972 + Psyr_4839 0.88 -0.9
5,744,973 - Psyr_4839 0.89 -0.7
5,744,973 - Psyr_4839 0.89 +0.7
5,744,973 - Psyr_4839 0.89 +0.8
5,745,009 - +0.1
5,745,068 - -0.7
5,745,080 + +1.0
5,745,081 - -0.2

Or see this region's nucleotide sequence