Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4827 and Psyr_4828 are separated by 610 nucleotides
Psyr_4827: Psyr_4827 - BCCT transporter, at 5,727,414 to 5,729,408
_4827
Psyr_4828: Psyr_4828 - urocanate hydratase, at 5,730,019 to 5,731,716
_4828
Position (kb) 5727
5728
5729
5730 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5726.441 kb on + strand at 5726.442 kb on - strand at 5726.499 kb on + strand at 5727.036 kb on + strand at 5727.036 kb on + strand at 5727.036 kb on + strand at 5727.321 kb on + strand at 5727.321 kb on + strand at 5727.387 kb on + strand at 5727.440 kb on + strand at 5727.440 kb on + strand at 5727.441 kb on - strand at 5727.441 kb on - strand at 5727.451 kb on + strand at 5727.452 kb on - strand at 5727.491 kb on - strand at 5727.491 kb on - strand at 5727.506 kb on - strand at 5727.548 kb on - strand at 5727.628 kb on + strand, within Psyr_4827 at 5727.628 kb on + strand, within Psyr_4827 at 5727.628 kb on + strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.969 kb on + strand, within Psyr_4827 at 5727.970 kb on - strand, within Psyr_4827 at 5727.970 kb on - strand, within Psyr_4827 at 5728.195 kb on + strand, within Psyr_4827 at 5728.196 kb on - strand, within Psyr_4827 at 5728.196 kb on - strand, within Psyr_4827 at 5728.213 kb on + strand, within Psyr_4827 at 5728.214 kb on - strand, within Psyr_4827 at 5728.385 kb on + strand, within Psyr_4827 at 5728.386 kb on - strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.738 kb on + strand, within Psyr_4827 at 5728.738 kb on + strand, within Psyr_4827 at 5728.857 kb on - strand, within Psyr_4827 at 5729.128 kb on + strand, within Psyr_4827 at 5729.212 kb on + strand at 5729.212 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.236 kb on + strand at 5729.236 kb on + strand at 5729.237 kb on - strand at 5729.333 kb on + strand at 5729.334 kb on - strand at 5729.334 kb on - strand at 5729.350 kb on + strand at 5729.351 kb on - strand at 5729.431 kb on + strand at 5729.431 kb on + strand at 5729.432 kb on - strand at 5729.466 kb on - strand at 5729.466 kb on - strand at 5729.901 kb on - strand at 5729.910 kb on + strand at 5730.030 kb on + strand at 5730.030 kb on + strand at 5730.031 kb on - strand at 5730.031 kb on - strand at 5730.196 kb on + strand, within Psyr_4828 at 5730.235 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.291 kb on - strand, within Psyr_4828
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 5,726,441 + -0.2 5,726,442 - +0.6 5,726,499 + -0.8 5,727,036 + +1.0 5,727,036 + -2.0 5,727,036 + +1.6 5,727,321 + +0.8 5,727,321 + -0.0 5,727,387 + +1.0 5,727,440 + +0.4 5,727,440 + +0.9 5,727,441 - -0.4 5,727,441 - -0.1 5,727,451 + -0.5 5,727,452 - -0.7 5,727,491 - +1.4 5,727,491 - -0.0 5,727,506 - -0.3 5,727,548 - +0.7 5,727,628 + Psyr_4827 0.11 +0.2 5,727,628 + Psyr_4827 0.11 -2.2 5,727,628 + Psyr_4827 0.11 -0.2 5,727,629 - Psyr_4827 0.11 +1.0 5,727,629 - Psyr_4827 0.11 -1.6 5,727,629 - Psyr_4827 0.11 +0.2 5,727,868 + Psyr_4827 0.23 -0.0 5,727,868 + Psyr_4827 0.23 +0.7 5,727,868 + Psyr_4827 0.23 -1.3 5,727,868 + Psyr_4827 0.23 +0.2 5,727,969 + Psyr_4827 0.28 +0.3 5,727,970 - Psyr_4827 0.28 +1.0 5,727,970 - Psyr_4827 0.28 -0.1 5,728,195 + Psyr_4827 0.39 -0.8 5,728,196 - Psyr_4827 0.39 -0.2 5,728,196 - Psyr_4827 0.39 +1.7 5,728,213 + Psyr_4827 0.40 +1.6 5,728,214 - Psyr_4827 0.40 -0.5 5,728,385 + Psyr_4827 0.49 +0.3 5,728,386 - Psyr_4827 0.49 +0.3 5,728,438 + Psyr_4827 0.51 +0.5 5,728,438 + Psyr_4827 0.51 +0.0 5,728,438 + Psyr_4827 0.51 -0.0 5,728,439 - Psyr_4827 0.51 +0.1 5,728,439 - Psyr_4827 0.51 -0.0 5,728,439 - Psyr_4827 0.51 -0.7 5,728,480 + Psyr_4827 0.53 +0.3 5,728,480 + Psyr_4827 0.53 +0.3 5,728,480 + Psyr_4827 0.53 -0.1 5,728,480 + Psyr_4827 0.53 -1.0 5,728,480 + Psyr_4827 0.53 -0.8 5,728,480 + Psyr_4827 0.53 +1.0 5,728,480 + Psyr_4827 0.53 -0.8 5,728,480 + Psyr_4827 0.53 -0.2 5,728,481 - Psyr_4827 0.53 +3.1 5,728,481 - Psyr_4827 0.53 +0.7 5,728,481 - Psyr_4827 0.53 -0.0 5,728,481 - Psyr_4827 0.53 +0.6 5,728,481 - Psyr_4827 0.53 +0.5 5,728,481 - Psyr_4827 0.53 +0.2 5,728,481 - Psyr_4827 0.53 -0.1 5,728,486 + Psyr_4827 0.54 +0.7 5,728,486 + Psyr_4827 0.54 -1.4 5,728,486 + Psyr_4827 0.54 -0.0 5,728,486 + Psyr_4827 0.54 -0.3 5,728,486 + Psyr_4827 0.54 +0.6 5,728,486 + Psyr_4827 0.54 -1.0 5,728,486 + Psyr_4827 0.54 +0.2 5,728,486 + Psyr_4827 0.54 +0.8 5,728,486 + Psyr_4827 0.54 -0.5 5,728,486 + Psyr_4827 0.54 +2.6 5,728,486 + Psyr_4827 0.54 +0.2 5,728,486 + Psyr_4827 0.54 +0.4 5,728,486 + Psyr_4827 0.54 -0.6 5,728,487 - Psyr_4827 0.54 +0.3 5,728,487 - Psyr_4827 0.54 -0.2 5,728,487 - Psyr_4827 0.54 -1.8 5,728,487 - Psyr_4827 0.54 +0.4 5,728,487 - Psyr_4827 0.54 -0.6 5,728,487 - Psyr_4827 0.54 -0.8 5,728,487 - Psyr_4827 0.54 +0.7 5,728,487 - Psyr_4827 0.54 +0.2 5,728,487 - Psyr_4827 0.54 +1.3 5,728,613 + Psyr_4827 0.60 +0.1 5,728,613 + Psyr_4827 0.60 -1.1 5,728,613 + Psyr_4827 0.60 +0.8 5,728,613 + Psyr_4827 0.60 -0.2 5,728,613 + Psyr_4827 0.60 +1.1 5,728,613 + Psyr_4827 0.60 -0.6 5,728,613 + Psyr_4827 0.60 +0.3 5,728,613 + Psyr_4827 0.60 +1.3 5,728,613 + Psyr_4827 0.60 +0.1 5,728,613 + Psyr_4827 0.60 -0.6 5,728,614 - Psyr_4827 0.60 +0.3 5,728,614 - Psyr_4827 0.60 +0.0 5,728,614 - Psyr_4827 0.60 +1.2 5,728,614 - Psyr_4827 0.60 +0.2 5,728,614 - Psyr_4827 0.60 -0.7 5,728,614 - Psyr_4827 0.60 -0.3 5,728,738 + Psyr_4827 0.66 +0.1 5,728,738 + Psyr_4827 0.66 -0.3 5,728,857 - Psyr_4827 0.72 +0.2 5,729,128 + Psyr_4827 0.86 -0.2 5,729,212 + -0.5 5,729,212 + -0.3 5,729,233 + -0.0 5,729,233 + +0.3 5,729,233 + +0.2 5,729,233 + +0.5 5,729,233 + +0.4 5,729,233 + -0.3 5,729,233 + -0.6 5,729,233 + -0.4 5,729,233 + +0.6 5,729,233 + -0.4 5,729,233 + +0.3 5,729,233 + -0.6 5,729,233 + -1.1 5,729,233 + -0.1 5,729,233 + -0.1 5,729,233 + -0.1 5,729,233 + -0.4 5,729,233 + -0.5 5,729,233 + -2.3 5,729,233 + -0.6 5,729,233 + +0.5 5,729,233 + -1.0 5,729,233 + -0.2 5,729,233 + -1.5 5,729,234 - +0.3 5,729,234 - +0.2 5,729,234 - +0.6 5,729,234 - +0.2 5,729,234 - -0.2 5,729,234 - -0.7 5,729,234 - +0.5 5,729,234 - -0.7 5,729,234 - +2.6 5,729,234 - +0.3 5,729,234 - -0.1 5,729,234 - -0.3 5,729,234 - +0.3 5,729,234 - +0.6 5,729,234 - +0.5 5,729,234 - +0.6 5,729,234 - +0.1 5,729,236 + +1.2 5,729,236 + +1.0 5,729,237 - -0.0 5,729,333 + -0.0 5,729,334 - +0.6 5,729,334 - -0.8 5,729,350 + +1.3 5,729,351 - -2.0 5,729,431 + +1.2 5,729,431 + -0.9 5,729,432 - -1.0 5,729,466 - -0.6 5,729,466 - +2.6 5,729,901 - +0.2 5,729,910 + -0.0 5,730,030 + +0.7 5,730,030 + +0.7 5,730,031 - +1.0 5,730,031 - -0.7 5,730,196 + Psyr_4828 0.10 +0.2 5,730,235 + Psyr_4828 0.13 -0.3 5,730,290 + Psyr_4828 0.16 -0.8 5,730,290 + Psyr_4828 0.16 +1.2 5,730,290 + Psyr_4828 0.16 -1.8 5,730,291 - Psyr_4828 0.16 -0.6
Or see this region's nucleotide sequence