Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4821 and Psyr_4822 overlap by 4 nucleotides Psyr_4822 and Psyr_4823 are separated by 288 nucleotides
Psyr_4821: Psyr_4821 - PAS/PAC sensor signal transduction histidine kinase, at 5,717,771 to 5,718,856
_4821
Psyr_4822: Psyr_4822 - Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I), at 5,718,853 to 5,720,289
_4822
Psyr_4823: Psyr_4823 - Aldo/keto reductase, at 5,720,578 to 5,721,615
_4823
Position (kb) 5718
5719
5720
5721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.995 kb on + strand, within Psyr_4821 at 5717.995 kb on + strand, within Psyr_4821 at 5718.065 kb on - strand, within Psyr_4821 at 5718.071 kb on - strand, within Psyr_4821 at 5718.278 kb on + strand, within Psyr_4821 at 5718.279 kb on - strand, within Psyr_4821 at 5718.279 kb on - strand, within Psyr_4821 at 5718.317 kb on - strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.434 kb on - strand, within Psyr_4821 at 5718.449 kb on + strand, within Psyr_4821 at 5718.450 kb on - strand, within Psyr_4821 at 5718.511 kb on + strand, within Psyr_4821 at 5718.732 kb on + strand, within Psyr_4821 at 5718.732 kb on + strand, within Psyr_4821 at 5718.732 kb on + strand, within Psyr_4821 at 5718.732 kb on + strand, within Psyr_4821 at 5718.732 kb on + strand, within Psyr_4821 at 5718.733 kb on - strand, within Psyr_4821 at 5718.733 kb on - strand, within Psyr_4821 at 5718.733 kb on - strand, within Psyr_4821 at 5718.882 kb on - strand at 5719.157 kb on - strand, within Psyr_4822 at 5719.894 kb on + strand, within Psyr_4822 at 5719.894 kb on + strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.296 kb on - strand at 5720.296 kb on - strand at 5720.296 kb on - strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.316 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.400 kb on + strand at 5720.401 kb on - strand at 5720.504 kb on - strand at 5720.504 kb on - strand at 5720.504 kb on - strand at 5720.507 kb on - strand at 5720.524 kb on + strand at 5720.524 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.565 kb on - strand at 5720.565 kb on - strand at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.949 kb on + strand, within Psyr_4823 at 5720.982 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.114 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.221 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 5,717,858 + -0.3 5,717,858 + -1.1 5,717,858 + +0.2 5,717,858 + +0.2 5,717,858 + -0.1 5,717,858 + -0.0 5,717,859 - -2.6 5,717,859 - -1.1 5,717,859 - -1.2 5,717,859 - -1.3 5,717,859 - -0.7 5,717,995 + Psyr_4821 0.21 +1.6 5,717,995 + Psyr_4821 0.21 +0.2 5,718,065 - Psyr_4821 0.27 -0.6 5,718,071 - Psyr_4821 0.28 -0.2 5,718,278 + Psyr_4821 0.47 +0.2 5,718,279 - Psyr_4821 0.47 -0.4 5,718,279 - Psyr_4821 0.47 -2.7 5,718,317 - Psyr_4821 0.50 -0.7 5,718,433 + Psyr_4821 0.61 -0.1 5,718,433 + Psyr_4821 0.61 -0.0 5,718,433 + Psyr_4821 0.61 -0.6 5,718,433 + Psyr_4821 0.61 -0.4 5,718,434 - Psyr_4821 0.61 -2.7 5,718,449 + Psyr_4821 0.62 +0.4 5,718,450 - Psyr_4821 0.63 -0.6 5,718,511 + Psyr_4821 0.68 +0.4 5,718,732 + Psyr_4821 0.88 +0.0 5,718,732 + Psyr_4821 0.88 -0.5 5,718,732 + Psyr_4821 0.88 -0.8 5,718,732 + Psyr_4821 0.88 -0.1 5,718,732 + Psyr_4821 0.88 +1.0 5,718,733 - Psyr_4821 0.89 -1.0 5,718,733 - Psyr_4821 0.89 -1.6 5,718,733 - Psyr_4821 0.89 -1.2 5,718,882 - -0.5 5,719,157 - Psyr_4822 0.21 -1.8 5,719,894 + Psyr_4822 0.72 +0.5 5,719,894 + Psyr_4822 0.72 +1.0 5,719,895 - Psyr_4822 0.73 -1.6 5,719,895 - Psyr_4822 0.73 -0.8 5,719,895 - Psyr_4822 0.73 -0.9 5,720,295 + -1.5 5,720,295 + -0.8 5,720,295 + -0.6 5,720,295 + -0.9 5,720,295 + +0.3 5,720,296 - +0.4 5,720,296 - -0.6 5,720,296 - +0.5 5,720,297 + +0.7 5,720,297 + -0.4 5,720,297 + +0.1 5,720,297 + -1.1 5,720,297 + +0.7 5,720,297 + +0.3 5,720,297 + -0.8 5,720,297 + -0.0 5,720,297 + -1.2 5,720,297 + +0.4 5,720,297 + +0.6 5,720,297 + -0.2 5,720,297 + -0.3 5,720,297 + +0.1 5,720,298 - -0.5 5,720,298 - -0.3 5,720,298 - -0.6 5,720,298 - +0.6 5,720,298 - +0.5 5,720,298 - -0.0 5,720,298 - -0.0 5,720,298 - -0.6 5,720,298 - -0.1 5,720,298 - +0.5 5,720,298 - -0.6 5,720,298 - +0.9 5,720,298 - +0.2 5,720,298 - -0.7 5,720,298 - +0.7 5,720,298 - +2.4 5,720,316 + +0.1 5,720,337 + -0.5 5,720,337 + +0.4 5,720,337 + -0.0 5,720,337 + -0.2 5,720,337 + +1.6 5,720,337 + +0.4 5,720,337 + +0.7 5,720,337 + +0.3 5,720,338 - +0.4 5,720,338 - +0.8 5,720,338 - +0.2 5,720,338 - -0.3 5,720,338 - +1.2 5,720,338 - +0.8 5,720,338 - +1.0 5,720,338 - +1.1 5,720,338 - +1.6 5,720,400 + -0.3 5,720,401 - -0.7 5,720,504 - +0.3 5,720,504 - +0.5 5,720,504 - -0.0 5,720,507 - +0.4 5,720,524 + -1.5 5,720,524 + -2.6 5,720,528 + +1.2 5,720,528 + -0.1 5,720,528 + +0.2 5,720,528 + -0.5 5,720,528 + -0.6 5,720,528 + +0.3 5,720,528 + +1.0 5,720,529 - +0.5 5,720,529 - -0.7 5,720,529 - +0.3 5,720,529 - -0.3 5,720,529 - -0.6 5,720,529 - +0.3 5,720,529 - +0.3 5,720,529 - +2.0 5,720,529 - +0.6 5,720,529 - -0.1 5,720,529 - +0.4 5,720,529 - +0.3 5,720,529 - +1.6 5,720,565 - +0.3 5,720,565 - +0.6 5,720,915 + Psyr_4823 0.32 -1.3 5,720,915 + Psyr_4823 0.32 -0.2 5,720,915 + Psyr_4823 0.32 -2.5 5,720,916 - Psyr_4823 0.33 +0.6 5,720,916 - Psyr_4823 0.33 +0.3 5,720,916 - Psyr_4823 0.33 -2.5 5,720,916 - Psyr_4823 0.33 -1.3 5,720,916 - Psyr_4823 0.33 -0.4 5,720,949 + Psyr_4823 0.36 -0.1 5,720,982 + Psyr_4823 0.39 -0.8 5,721,026 + Psyr_4823 0.43 +1.7 5,721,026 + Psyr_4823 0.43 -0.5 5,721,027 - Psyr_4823 0.43 -1.2 5,721,027 - Psyr_4823 0.43 +0.5 5,721,114 + Psyr_4823 0.52 +0.1 5,721,122 + Psyr_4823 0.52 -0.3 5,721,122 + Psyr_4823 0.52 +1.6 5,721,122 + Psyr_4823 0.52 -0.1 5,721,122 + Psyr_4823 0.52 +0.1 5,721,122 + Psyr_4823 0.52 +1.6 5,721,122 + Psyr_4823 0.52 -0.5 5,721,122 + Psyr_4823 0.52 -0.3 5,721,122 + Psyr_4823 0.52 +1.6 5,721,122 + Psyr_4823 0.52 -0.6 5,721,122 + Psyr_4823 0.52 +0.4 5,721,122 + Psyr_4823 0.52 +0.6 5,721,122 + Psyr_4823 0.52 -0.6 5,721,123 - Psyr_4823 0.53 -0.5 5,721,123 - Psyr_4823 0.53 +1.9 5,721,123 - Psyr_4823 0.53 -1.2 5,721,206 + Psyr_4823 0.61 +0.4 5,721,206 + Psyr_4823 0.61 -0.4 5,721,206 + Psyr_4823 0.61 +1.0 5,721,206 + Psyr_4823 0.61 -0.3 5,721,207 - Psyr_4823 0.61 -0.4 5,721,207 - Psyr_4823 0.61 -0.3 5,721,221 + Psyr_4823 0.62 +0.6 5,721,269 + Psyr_4823 0.67 -0.2 5,721,269 + Psyr_4823 0.67 -1.7 5,721,269 + Psyr_4823 0.67 -0.8 5,721,269 + Psyr_4823 0.67 +0.7 5,721,269 + Psyr_4823 0.67 -0.4 5,721,269 + Psyr_4823 0.67 -1.3 5,721,269 + Psyr_4823 0.67 +0.5 5,721,269 + Psyr_4823 0.67 -0.3 5,721,269 + Psyr_4823 0.67 -1.4 5,721,269 + Psyr_4823 0.67 -1.0 5,721,269 + Psyr_4823 0.67 -0.2 5,721,270 - Psyr_4823 0.67 -0.7 5,721,270 - Psyr_4823 0.67 -2.0 5,721,270 - Psyr_4823 0.67 -0.1 5,721,270 - Psyr_4823 0.67 +0.6 5,721,273 + Psyr_4823 0.67 +1.0 5,721,273 + Psyr_4823 0.67 -0.3 5,721,273 + Psyr_4823 0.67 -0.0 5,721,274 - Psyr_4823 0.67 -0.2 5,721,274 - Psyr_4823 0.67 -0.6 5,721,274 - Psyr_4823 0.67 +0.6 5,721,274 - Psyr_4823 0.67 -0.6 5,721,274 - Psyr_4823 0.67 +0.1
Or see this region's nucleotide sequence