Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4089 and Psyr_4090 are separated by 15 nucleotides Psyr_4090 and Psyr_4091 are separated by 261 nucleotides Psyr_4091 and Psyr_4092 are separated by 2 nucleotides Psyr_4092 and Psyr_4093 are separated by 57 nucleotides
Psyr_4089: Psyr_4089 - PAS, at 4,874,589 to 4,876,625
_4089
Psyr_4090: Psyr_4090 - ATP:cob(I)alamin adenosyltransferase, at 4,876,641 to 4,877,219
_4090
Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431
_4091
Psyr_4092: Psyr_4092 - Glutathione S-transferase, N-terminal, at 4,878,434 to 4,879,060
_4092
Psyr_4093: Psyr_4093 - glutamate N-acetyltransferase, at 4,879,118 to 4,880,335
_4093
Position (kb) 4877
4878
4879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4876.528 kb on + strand at 4876.528 kb on + strand at 4876.529 kb on - strand at 4876.665 kb on + strand at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4877.040 kb on - strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.279 kb on + strand at 4877.283 kb on + strand at 4877.283 kb on + strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.356 kb on - strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.427 kb on + strand at 4877.428 kb on - strand at 4877.428 kb on - strand at 4877.431 kb on + strand at 4877.431 kb on + strand at 4877.432 kb on - strand at 4877.432 kb on - strand at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.920 kb on + strand, within Psyr_4091 at 4877.921 kb on - strand, within Psyr_4091 at 4877.933 kb on - strand, within Psyr_4091 at 4878.037 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091 at 4878.378 kb on + strand at 4878.486 kb on + strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.501 kb on + strand, within Psyr_4092 at 4878.501 kb on + strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.535 kb on - strand, within Psyr_4092 at 4878.725 kb on - strand, within Psyr_4092 at 4878.840 kb on + strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4879.026 kb on + strand at 4879.027 kb on - strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.314 kb on - strand, within Psyr_4093 at 4879.372 kb on + strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 4,876,528 + +0.8 4,876,528 + -2.0 4,876,529 - -0.4 4,876,665 + +0.5 4,876,846 + Psyr_4090 0.35 -0.2 4,876,846 + Psyr_4090 0.35 +1.1 4,876,846 + Psyr_4090 0.35 -0.4 4,876,846 + Psyr_4090 0.35 -0.2 4,876,847 - Psyr_4090 0.36 -0.2 4,876,847 - Psyr_4090 0.36 +0.6 4,876,847 - Psyr_4090 0.36 -0.2 4,876,905 + Psyr_4090 0.46 +0.4 4,876,905 + Psyr_4090 0.46 +0.8 4,876,905 + Psyr_4090 0.46 +0.8 4,876,906 - Psyr_4090 0.46 -1.8 4,876,906 - Psyr_4090 0.46 +0.6 4,877,040 - Psyr_4090 0.69 +0.6 4,877,115 + Psyr_4090 0.82 -0.1 4,877,115 + Psyr_4090 0.82 +0.0 4,877,115 + Psyr_4090 0.82 +0.5 4,877,115 + Psyr_4090 0.82 -1.5 4,877,116 - Psyr_4090 0.82 +1.0 4,877,116 - Psyr_4090 0.82 +1.2 4,877,116 - Psyr_4090 0.82 +0.4 4,877,116 - Psyr_4090 0.82 +1.5 4,877,116 - Psyr_4090 0.82 +0.5 4,877,226 + -2.1 4,877,226 + +0.3 4,877,226 + -0.1 4,877,226 + +0.7 4,877,226 + -0.2 4,877,227 - -0.5 4,877,227 - -0.9 4,877,227 - -0.3 4,877,279 + +1.8 4,877,283 + -0.7 4,877,283 + -0.5 4,877,284 - -0.2 4,877,284 - +0.1 4,877,284 - -0.7 4,877,285 + +1.5 4,877,285 + -0.1 4,877,285 + +1.3 4,877,285 + +0.1 4,877,285 + +0.3 4,877,285 + +0.8 4,877,285 + -0.0 4,877,285 + +2.0 4,877,285 + -0.0 4,877,285 + +0.0 4,877,285 + +0.8 4,877,285 + +1.0 4,877,285 + +0.6 4,877,285 + +2.6 4,877,286 - -1.2 4,877,286 - +0.0 4,877,286 - +2.8 4,877,286 - +1.8 4,877,286 - -0.2 4,877,286 - +0.1 4,877,286 - +1.1 4,877,286 - +1.2 4,877,286 - +1.4 4,877,286 - -0.4 4,877,286 - -0.2 4,877,286 - +0.8 4,877,286 - +0.4 4,877,356 - -0.8 4,877,419 + -1.2 4,877,419 + +1.9 4,877,419 + -0.3 4,877,419 + +0.3 4,877,419 + +0.4 4,877,419 + +0.4 4,877,419 + +0.1 4,877,419 + -0.9 4,877,419 + +0.5 4,877,419 + -0.1 4,877,419 + -1.3 4,877,419 + +1.7 4,877,420 - +0.8 4,877,420 - -1.4 4,877,420 - -2.0 4,877,420 - -0.3 4,877,420 - +0.4 4,877,427 + +0.4 4,877,428 - +0.6 4,877,428 - -0.7 4,877,431 + +0.6 4,877,431 + +2.4 4,877,432 - +1.3 4,877,432 - +0.8 4,877,788 + Psyr_4091 0.32 -3.2 4,877,788 + Psyr_4091 0.32 -2.2 4,877,788 + Psyr_4091 0.32 -3.0 4,877,789 - Psyr_4091 0.32 -0.2 4,877,789 - Psyr_4091 0.32 -1.2 4,877,789 - Psyr_4091 0.32 -0.4 4,877,920 + Psyr_4091 0.46 -3.2 4,877,921 - Psyr_4091 0.46 -2.2 4,877,933 - Psyr_4091 0.48 -1.8 4,878,037 + Psyr_4091 0.58 -1.5 4,878,094 + Psyr_4091 0.64 -3.5 4,878,094 + Psyr_4091 0.64 -1.5 4,878,094 + Psyr_4091 0.64 -1.2 4,878,094 + Psyr_4091 0.64 -1.5 4,878,094 + Psyr_4091 0.64 -3.2 4,878,095 - Psyr_4091 0.65 -3.0 4,878,095 - Psyr_4091 0.65 +0.7 4,878,378 + -2.5 4,878,486 + +0.8 4,878,487 - +1.2 4,878,487 - +1.1 4,878,487 - -0.5 4,878,487 - -0.8 4,878,487 - -0.6 4,878,487 - -0.1 4,878,487 - -0.8 4,878,487 - +0.8 4,878,487 - -0.7 4,878,501 + Psyr_4092 0.11 +2.2 4,878,501 + Psyr_4092 0.11 -0.8 4,878,502 - Psyr_4092 0.11 +0.2 4,878,502 - Psyr_4092 0.11 +0.4 4,878,502 - Psyr_4092 0.11 +0.8 4,878,502 - Psyr_4092 0.11 -1.8 4,878,502 - Psyr_4092 0.11 +0.8 4,878,535 - Psyr_4092 0.16 +0.1 4,878,725 - Psyr_4092 0.46 +0.8 4,878,840 + Psyr_4092 0.65 +1.4 4,878,841 - Psyr_4092 0.65 -0.2 4,878,841 - Psyr_4092 0.65 -0.2 4,878,915 + Psyr_4092 0.77 -1.3 4,878,915 + Psyr_4092 0.77 -0.9 4,878,915 + Psyr_4092 0.77 -1.0 4,878,916 - Psyr_4092 0.77 -1.8 4,878,916 - Psyr_4092 0.77 -1.3 4,879,026 + -3.1 4,879,027 - +1.5 4,879,149 + -0.9 4,879,149 + -1.8 4,879,149 + -1.4 4,879,149 + -2.0 4,879,263 + Psyr_4093 0.12 -1.3 4,879,263 + Psyr_4093 0.12 -0.6 4,879,263 + Psyr_4093 0.12 -1.1 4,879,263 + Psyr_4093 0.12 -0.5 4,879,264 - Psyr_4093 0.12 -2.7 4,879,264 - Psyr_4093 0.12 -0.4 4,879,298 + Psyr_4093 0.15 +0.8 4,879,298 + Psyr_4093 0.15 -0.0 4,879,313 + Psyr_4093 0.16 -0.8 4,879,313 + Psyr_4093 0.16 +0.1 4,879,314 - Psyr_4093 0.16 +1.3 4,879,372 + Psyr_4093 0.21 -1.8 4,879,373 - Psyr_4093 0.21 -0.1 4,879,373 - Psyr_4093 0.21 +1.3
Or see this region's nucleotide sequence