Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3945 and Psyr_3946 are separated by 100 nucleotides Psyr_3946 and Psyr_3947 overlap by 4 nucleotides Psyr_3947 and Psyr_3948 are separated by 8 nucleotides Psyr_3948 and Psyr_3949 are separated by 59 nucleotides
Psyr_3945: Psyr_3945 - secreted protein-like protein, at 4,694,046 to 4,694,438
_3945
Psyr_3946: Psyr_3946 - Proteobacterial methyltransferase, at 4,694,539 to 4,695,282
_3946
Psyr_3947: Psyr_3947 - Methyltransferase, putative, at 4,695,279 to 4,696,238
_3947
Psyr_3948: Psyr_3948 - pyridoxine 5'-phosphate synthase, at 4,696,247 to 4,696,987
_3948
Psyr_3949: Psyr_3949 - DNA replication and repair protein RecO, at 4,697,047 to 4,697,730
_3949
Position (kb) 4695
4696
4697 Strain fitness (log2 ratio) -2
-1
0
1 at 4694.370 kb on + strand, within Psyr_3945 at 4694.370 kb on + strand, within Psyr_3945 at 4694.470 kb on - strand at 4694.723 kb on - strand, within Psyr_3946 at 4694.842 kb on + strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946 at 4695.252 kb on + strand at 4695.464 kb on + strand, within Psyr_3947 at 4695.465 kb on - strand, within Psyr_3947 at 4695.864 kb on + strand, within Psyr_3947 at 4695.864 kb on + strand, within Psyr_3947 at 4695.865 kb on - strand, within Psyr_3947 at 4696.249 kb on - strand at 4697.037 kb on + strand at 4697.038 kb on - strand at 4697.216 kb on + strand, within Psyr_3949 at 4697.216 kb on + strand, within Psyr_3949 at 4697.216 kb on + strand, within Psyr_3949 at 4697.217 kb on - strand, within Psyr_3949 at 4697.217 kb on - strand, within Psyr_3949
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 4,694,370 + Psyr_3945 0.82 -0.8 4,694,370 + Psyr_3945 0.82 +0.8 4,694,470 - +1.1 4,694,723 - Psyr_3946 0.25 +0.0 4,694,842 + Psyr_3946 0.41 +0.0 4,694,843 - Psyr_3946 0.41 +0.7 4,694,843 - Psyr_3946 0.41 -0.3 4,694,843 - Psyr_3946 0.41 +0.6 4,695,252 + -0.1 4,695,464 + Psyr_3947 0.19 +0.2 4,695,465 - Psyr_3947 0.19 -0.4 4,695,864 + Psyr_3947 0.61 -1.2 4,695,864 + Psyr_3947 0.61 -2.7 4,695,865 - Psyr_3947 0.61 -0.3 4,696,249 - +0.3 4,697,037 + +0.4 4,697,038 - +1.3 4,697,216 + Psyr_3949 0.25 -0.7 4,697,216 + Psyr_3949 0.25 -1.5 4,697,216 + Psyr_3949 0.25 -0.4 4,697,217 - Psyr_3949 0.25 +0.2 4,697,217 - Psyr_3949 0.25 -0.2
Or see this region's nucleotide sequence